PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0005s01170.1
Common NameLR48_Vigan06g129300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 297aa    MW: 33137.9 Da    PI: 7.181
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0005s01170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.3e-05116135120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++C+ C+k+F+r  n++ H+
  Vang0005s01170.1 116 FSCTVCNKMFNRFNNMQMHM 135
                       89*****************9 PP

2zf-C2H213.90.00016201223123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C +Cgk+F  + + ++H +++
  Vang0005s01170.1 201 FGCRKCGKPFAVRGDWRTHEKNC 223
                       56*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.43E-590137No hitNo description
PROSITE profilePS501579.889116143IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-5116135IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
SuperFamilySSF576671.13E-5184221No hitNo description
Gene3DG3DSA:3.30.160.606.4E-5187221IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MQTHPFSYIS SCPGSTAFLE PHHHQEPVDE ASISLSLGPP GQLHHHPKGT SSSSSSSNLP  60
STLHHYQHNP TSDDQRGVTV ALHIGLPNPT TSPNTPTQGQ YWIPSPAQIL IGPTQFSCTV  120
CNKMFNRFNN MQMHMWGHGS QYRKGPESLR GAKPASSMLR LPCYCCAEGC KNNIDHPRSR  180
PLKDFRTLQT HYKRKHGAKP FGCRKCGKPF AVRGDWRTHE KNCGKLWFCI CGSDFKHKRS  240
LKDHVRAFGD GHAPHTVESC DQIGEDDLFG DEDEEELDLE DDDEGYNSNE VVFGFN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0005s01170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017426956.10.0PREDICTED: zinc finger protein WIP6
SwissprotQ9FX681e-119ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A0L9UTT80.0A0A0L9UTT8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T1T20.0A0A0S3T1T2_PHAAN; Uncharacterized protein
STRINGXP_007153349.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-118C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]