PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0005s00080.1
Common NameLR48_Vigan09g177500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 452aa    MW: 50048.6 Da    PI: 8.8547
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0005s00080.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00032396418123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++Cp+C+k F++   L  H r+H
  Vang0005s00080.1 396 HECPICNKIFRSGQALGGHKRSH 418
                       79******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.41E-6735No hitNo description
Gene3DG3DSA:3.30.160.601.2E-4833IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.1381138IPR007087Zinc finger, C2H2
PfamPF139121.5E-61134IPR007087Zinc finger, C2H2
SMARTSM003550.141133IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801333IPR007087Zinc finger, C2H2
PROSITE profilePS501579.395885IPR007087Zinc finger, C2H2
SMARTSM003551.95880IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.38E-85980No hitNo description
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
PfamPF139126.0E-56082IPR007087Zinc finger, C2H2
SuperFamilySSF576672.38E-8391418No hitNo description
PfamPF139122.0E-11395418IPR007087Zinc finger, C2H2
PROSITE profilePS501579.702396418IPR007087Zinc finger, C2H2
SMARTSM003550.018396418IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280398418IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MSYQSMEERK FVCKYCSKRF PCGKSLGGHI RTHMMSENSA LGNAERSNAT NGILQLEKFC  60
KECGKGFLSL KALCGHMACH SEKDKGGNRF ESSSSGFAEK QKLAMDSQSD TETSTPRRSK  120
RKRFKTLSNS NNQAQSSVSE VEQGQEEVAR CLMMLSKDSS YKGRFSLFTE SSDNNSVVLE  180
VKSPSPDTKV TMMNSDGKNF VSGAYVEKKL EQSKEFKYAE VGYDSDNSDS GYFRYGPKEV  240
DSTDSNNGNF KNEVQSSKVG CFSGFEDYDV ESRKVPSRSV EFKKFVVENW ENDRQDGGAA  300
RKFDSKKSKK PNYDSLGQNL VRVSSRKMGN GSANDKVNKY ECLTSERDNG YDDSAYESDE  360
NSTDSDSYPA PKAYSKRNLS GQKGKKKLKS KKSKAHECPI CNKIFRSGQA LGGHKRSHFI  420
GGSEENTLVI RPGAAAVPCL IDLNLPAPVD E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116122RRSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0005s00080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435467.10.0PREDICTED: dentin sialophosphoprotein-like
TrEMBLA0A0L9VDH70.0A0A0L9VDH7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T1U50.0A0A0S3T1U5_PHAAN; Uncharacterized protein
STRINGXP_007157592.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-75C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]