PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0004ss00640.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 380aa    MW: 41869.7 Da    PI: 9.4304
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0004ss00640.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-055678123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       + C+ C+k F r  nL+ H r H
  Vang0004ss00640.1 56 FICEVCNKGFQREQNLQLHRRGH 78
                       89*******************88 PP

2zf-C2H212.60.00042132154123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k +  +s+ k H +t+
  Vang0004ss00640.1 132 WKCDKCSKKYAVQSDWKAHSKTC 154
                        58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF121711.3E-55578IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00525678IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.37E-85678No hitNo description
Gene3DG3DSA:3.30.160.608.7E-65678IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.995678IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
SMARTSM0035513097127IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.2E-5120153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.37E-8127152No hitNo description
SMARTSM00355150132152IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MAAPFSSASL FGIREEDQNQ MKQQHSSTTT PSSSSTPAAP PPQKKRRNQP GTPSKFICEV  60
CNKGFQREQN LQLHRRGHNL PWKLKQKSNK EPKRKVYLCP EPTCVHHDPS RALGDLTGIK  120
KHYSRKHGEK KWKCDKCSKK YAVQSDWKAH SKTCGTREYR CDCGTLFSRR DSFITHRAFC  180
DALAQESARE PPNLSSAIGN QLFGNSNNMS LGLSQNLGAQ IPSIHDQNSQ PSDLLRFCGA  240
PRTGHHTPNY SEEHHFNPTE ASNFFTEGTI IGIDHQTSSA TAPSLFSTTL QNTTNLSHMS  300
ATALLQKAAQ MGAASSSTNN SASSLLRSLA SKSDHRPLIS AANYSNILNS SECELDPFIN  360
VHLFGSSGAA YLEFLYRTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-36128189364Zinc finger protein JACKDAW
5b3h_F9e-36128189364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0004ss00640.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017426406.11e-169PREDICTED: protein indeterminate-domain 5, chloroplastic-like
SwissprotQ8GYC11e-108IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A151R2I91e-175A0A151R2I9_CAJCA; Zinc finger protein JACKDAW
STRINGXP_007153119.11e-148(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.13e-93indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]