PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0002ss01220.1
Common NameLR48_Vigan06g074900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 310aa    MW: 36331.6 Da    PI: 8.4841
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0002ss01220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix895.4e-2848129186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +W++qe+++ i +r e+e+++ ++k++k+lWe vs+kmrergf+rsp+qCk+kw+nl +ryk  ++++ ++    s++cp+f++l+
  Vang0002ss01220.1  48 QWSQQETREFISIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNRYKGKETSDPEH----SRQCPFFEELH 129
                        7****************************************************************999986....899******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.6E-445107IPR001005SANT/Myb domain
CDDcd122036.19E-2747112No hitNo description
PfamPF138371.5E-2347130No hitNo description
PROSITE profilePS500907.72449105IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MFGGGGEDAF AARLGMVTPS LMNPATSLVM SGEVSAAVRE ERGPAQPQWS QQETREFISI  60
RAELERDFTA SKRNKTLWEV VSSKMRERGF RRSPEQCKCK WKNLVNRYKG KETSDPEHSR  120
QCPFFEELHA VFTQRAHNMQ RLLLESETRS AQTKKGVKRS SGDRSSEELS EDDDEVEYDS  180
EEEKPSRSNT RKRKVDKVGT DKSSSRANNP SNAVNSSTSS IQEMLKEFFQ HQLRMEMQWR  240
EMMERRAHER QLFEQEWRQS MEKLERERLI IEQAWREREE QRRMREESRA EKRDALLTTL  300
LNKLINESN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A1e-1449115773DNA binding protein GT-1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521444.10.0PREDICTED: trihelix transcription factor GT-3b-like
TrEMBLA0A0S3T3G00.0A0A0S3T3G0_PHAAN; Uncharacterized protein
TrEMBLA0A0L9URU20.0A0A0L9URU2_PHAAN; Uncharacterized protein
STRINGGLYMA01G35370.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17813385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.14e-40Trihelix family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]