PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678468105
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family CO-like
Protein Properties Length: 405aa    MW: 44970.6 Da    PI: 7.3607
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678468105genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.23e-074486341
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvp 41
                ++C+++  +++   C +++  lC+dC    H +    H ++p
  678468105 44 SQICDNCAAQPAGTRCVTDGLVLCQDCDWDAHGScatgHARSP 86
               579*************************999944777787766 PP

2CCT65.41.7e-22359402144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                R  a++RYkeKrktR+++K+irYesRKa+A++R+RvKGrFvk++
  678468105 359 RGDAVTRYKEKRKTRRYDKHIRYESRKARADTRKRVKGRFVKAT 402
                6789**************************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.172146IPR000315B-box-type zinc finger
SMARTSM003361.2E-5146IPR000315B-box-type zinc finger
CDDcd000212.04E-4434No hitNo description
PROSITE profilePS501199.5134287IPR000315B-box-type zinc finger
PfamPF006431.8E-54586IPR000315B-box-type zinc finger
CDDcd000211.48E-54687No hitNo description
SMARTSM003360.194787IPR000315B-box-type zinc finger
PfamPF062034.6E-17359401IPR010402CCT domain
PROSITE profilePS5101715.051359401IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MVGCDFCCDR TAILFCRADS AKLCLSCDHH VHTANALSQK HLRSQICDNC AAQPAGTRCV  60
TDGLVLCQDC DWDAHGSCAT GHARSPLEGF TGCPSPFELA SSWDLEITES KPPYEWSGLL  120
EELMVPIFSD YGGKNSTCGK QKQVILKQLL ELMSHSGVGT SQDKEEMVPP STPPCSTPWQ  180
LENFCHPPPE KKLSPQSQSN SFTTMLIQPV PKQEPWNSNN SRAQIWDFNR GQLRGKDDCS  240
PGDLEYGGDL VFNSNSYSDL VKETSLAKRR GLKIPVVDFS VSNKDTIPFY ALANSNHILI  300
QGPATSESNT LQPSQAGNER PSYDGIQDLY FADQSMPLRS DGASAATMKA NMELLAKNRG  360
DAVTRYKEKR KTRRYDKHIR YESRKARADT RKRVKGRFVK ATEES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086854.11e-153PREDICTED: LOW QUALITY PROTEIN: zinc finger protein CONSTANS-LIKE 14-like
TrEMBLA0A022QI551e-135A0A022QI55_ERYGU; Uncharacterized protein
STRINGPGSC0003DMT4000653771e-118(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67032126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.12e-81B-box type zinc finger protein with CCT domain