PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678467412
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family AP2
Protein Properties Length: 423aa    MW: 45671.8 Da    PI: 8.7543
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678467412genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.71.1e-16138187155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  678467412 138 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 187
                78*******************......55**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-8138187IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-16138197IPR016177DNA-binding domain
CDDcd000183.26E-11139197No hitNo description
PROSITE profilePS5103217.714139195IPR001471AP2/ERF domain
SMARTSM003803.5E-32139201IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-17139196IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MLDLNMDAFE VGFASDDDPE STPTAGSVVS TTTSNNVGKD EVNCNCSSSS LVTLNFSSNF  60
GKNGTVHIDD EAGDNVNELQ LFPTSPSAVP GFRTNYRLDL SSPEAARGVQ LGLYKTKLPV  120
DNPPQPKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR  180
AAVKFRGVDA DINFNVSDYE EDMKQMVNFT KEEFVHILRR QSSGFPRGSN KHRIAALQKP  240
DLREAGKAQV LGNRGYDKAA IQCNWREPVT GFESSKQTRE LSFAWRDGGC GSSIDLSLGI  300
SLPSNGSQGN GAARALRRPL PSGEMAYGQS HKAEAIPAQR SLMSTEYPQS WPGIFSGLPQ  360
TQRLAAKPSF EGCNSAGLPS PPWKPVSHVA VPPTPTLPSA ASSGFSSSTA PAPPSTSISA  420
FLP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678467412
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011102158.14e-94ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ9SK033e-62RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A0G2SJH42e-98A0A0G2SJH4_SALMI; AP10/EREBP Transcription Factors
STRINGMigut.F02018.1.p1e-83(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.24e-58related to AP2.7