PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678463723
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MIKC_MADS
Protein Properties Length: 196aa    MW: 22210.2 Da    PI: 5.0202
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678463723genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF901.2e-28959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krie+ks rqvtfskRr+g+lKKA+ELS+LC+a+v vii+sstgkly ++s
  678463723  9 KRIEDKSARQVTFSKRRAGLLKKAHELSILCAADVGVIIYSSTGKLYQFCS 59
               79***********************************************96 PP

2K-box29.53.1e-111201674794
      K-box  47 slkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                sl +L  Le+qLe++l +i++ K++lll+ i+ +  kek+l ee   L
  678463723 120 SLVDLVVLENQLETALLQIKTAKTHLLLNTISAMEDKEKALTEEMILL 167
                5789*************************************9987665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.436161IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-29279IPR002100Transcription factor, MADS-box
CDDcd002651.30E-37279No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-25323IPR002100Transcription factor, MADS-box
PfamPF003195.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.19584179IPR002487Transcription factor, K-box
PfamPF014866.2E-7117168IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGRRRLELKR IEDKSARQVT FSKRRAGLLK KAHELSILCA ADVGVIIYSS TGKLYQFCSG  60
NSLSRTLWRY YNYVGSEASP ANGERKEKAD YSKYSEYITS EELLQMVESQ LSEPCDDHDS  120
LVDLVVLENQ LETALLQIKT AKTHLLLNTI SAMEDKEKAL TEEMILLEGK KNVQKNVNVK  180
EATLDLNMAP DDENDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-19184183MEF2C
5f28_B4e-19184183MEF2C
5f28_C4e-19184183MEF2C
5f28_D4e-19184183MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678463723
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071241.12e-57agamous-like MADS-box protein AGL27 isoform X4
TrEMBLB2DCP78e-62B2DCP7_9LAMI; RIN-like MADS-box protein
STRINGXP_009595701.11e-55(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65060.16e-36MIKC_MADS family protein