PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678462241
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 190aa    MW: 20654.1 Da    PI: 9.68
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678462241genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.4e-20104152355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a+++a+ k++g
  678462241 104 YRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFETAEDAARAYDRAAIKFRG 152
                9*******.**********94....36*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.01E-23103160No hitNo description
SMARTSM003804.4E-40103166IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-23103161IPR016177DNA-binding domain
PfamPF008473.5E-14103152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-33103160IPR001471AP2/ERF domain
PROSITE profilePS5103225.488103160IPR001471AP2/ERF domain
PRINTSPR003672.5E-12104115IPR001471AP2/ERF domain
PRINTSPR003672.5E-12126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MQTKKRSADA TSPEELADVA SRRLTAEDET AAMVTALKRV ISGTESSPVS EDLPPGERKP  60
GGEGALTLTE DMETCLACGI KGCLGCSYFE EGVTGDRKRK KRNYRGVRQR PWGKWAAEIR  120
DPRKAARVWL GTFETAEDAA RAYDRAAIKF RGPRAKLNFP FTEYAAGENS STAGTGALNR  180
NYGRPGSSSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-26100161264ATERF1
3gcc_A3e-26100161264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196100RKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678462241
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088263.13e-51ethylene-responsive transcription factor ERF109
SwissprotQ9SZ063e-33EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A2G9GYP81e-59A0A2G9GYP8_9LAMI; Uncharacterized protein
STRINGXP_008454945.12e-49(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-33redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]