PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678461739
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 275aa    MW: 30541 Da    PI: 4.6133
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678461739genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-19122171255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+W+AeIrdp    ++ +r +lg+f++ae Aa a++ a+++++g
  678461739 122 KYRGVRQRP-WGKWAAEIRDP----IKaARLWLGTFDSAEAAAMAYDMAALRFRG 171
                8********.**********7....357*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.4E-32121180IPR001471AP2/ERF domain
PfamPF008475.3E-13122171IPR001471AP2/ERF domain
PROSITE profilePS5103225.264122179IPR001471AP2/ERF domain
CDDcd000181.22E-21122181No hitNo description
SMARTSM003805.7E-37122185IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-22122180IPR016177DNA-binding domain
PRINTSPR003675.3E-14123134IPR001471AP2/ERF domain
PRINTSPR003675.3E-14161181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MTLYMRDFKV EDTPQEAFQF HPWGGEMGME MEMEMDTETA QNQFFHGGNG NYGMLPGYAR  60
ELEMPAMVST PTNFVPGNSD GGVAGGGGVC VQSESVVTIV KEPAVYTYST SVTLNRDSSP  120
RKYRGVRQRP WGKWAAEIRD PIKAARLWLG TFDSAEAAAM AYDMAALRFR GNKAKLNFPE  180
NVKLASRESS NAPPKDERRS SNSSPPTAHT QPQIQGNNSD YDNQYNAWSM LDEPMMFYPS  240
VADYPTASLQ PDIIAELWPE MGGYSSGGPE FHWTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22121182466ATERF1
3gcc_A2e-22121182466ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678461739
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159794.17e-43hypothetical protein PHAVU_002G267800g
TrEMBLV7CR132e-41V7CR13_PHAVU; Uncharacterized protein
STRINGXP_007159794.13e-42(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.11e-26related to AP2 6