PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678460598
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family FAR1
Protein Properties Length: 890aa    MW: 100237 Da    PI: 8.0001
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678460598genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1385.5e-1255127290
       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                fY++YA+++GF++r + +  +  + + + r++vC+++g++++                 +C+a +++++ +++kw+vtk++++H+H+++
  678460598  55 FYEHYARNTGFRIRENVKPAR-SDSTSIFRELVCTRSGSSKRG---------------ASCEAAVVIELVSQNKWVVTKFVKDHTHAIS 127
                9*************9987766.6666899*********87663...............57**************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-855127IPR004330FAR1 DNA binding domain
PfamPF105511.4E-26262354IPR018289MULE transposase domain
PfamPF044344.7E-10529573IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.053540576IPR007527Zinc finger, SWIM-type
SMARTSM005756.4E-7551578IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 890 aa     Download sequence    Send to blast
MQKRGRITDD FSDDYNNGEI NPREQSLTED VGVDGTFHEP HIGMEFDSED TARMFYEHYA  60
RNTGFRIREN VKPARSDSTS IFRELVCTRS GSSKRGASCE AAVVIELVSQ NKWVVTKFVK  120
DHTHAISHCK TPKLKHRKRS ATTTKSVVEA IPSMDLVPSG MMCVSLVGNS LPEEMTHVGS  180
NFSSSGYTFK KMGSSGYLPG YCTPERTFGK DAQNLLEYFK KMQAENPGFY YAIQLDEENR  240
MANAFWSDSR SRTAYRHFGD AVTMDTLYRV NQYRVPFAPF MGVNNHGHLI LFGCALLLDE  300
SQSTFVWLFK TFLAAMNGKA PVSITTDQDR VIKAAVAHVF PNARHCINKW HVLREGQERL  360
SQLCRAHPNF QADLDNCVNK AETVEEFESS WGSLVVKYAL QRNEWLQSIY DARQQWVPVY  420
FRDSFFAAIF SSYGRGSSFF DGYVNQQTTL PMFFRQYERA LDNSFHREVK ADLDTLCTAP  480
VLRTPSPMEK QAATVYTKSV FSKFQEELVE TFAYTANRVH GNEHNSTYRV AKFEDDRKSY  540
CVSVNVDGMK ANCSCKMFEY CGILCRHVLT VFMVTNILTL PSHYFLKRWT RNAKGIAEDP  600
DGNEVGGQAT FTTRYNSLCK EAIMFAEEAA TSSETYCAAL SVLREGRKKV DGVKKSLKVA  660
TSPSLVTGVA FDDQRTNAGL PDLAPSLWPR QDEILQRFNL NHAGVPCQPI SNPNALHISP  720
VSLSQVRAPS NEMMVLPCLK SMTWMMENKN SNTATTLALI SLKLQDSGRT PVAESCVKFS  780
VSRVTLEPML KSMAHIIDQL STSTNKVAVI NLKCLDDIQL QDTETAIGES QLKFQVSRDA  840
LGAMLRSMAY IHQQLANTRN HCSLSRILFI NTSSSVSRPL SVQMQSKEDQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678460598
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090244.10.0protein FAR1-RELATED SEQUENCE 3
RefseqXP_011090246.10.0protein FAR1-RELATED SEQUENCE 3
RefseqXP_011090247.10.0protein FAR1-RELATED SEQUENCE 3
RefseqXP_020552429.10.0protein FAR1-RELATED SEQUENCE 3
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A2G9GF540.0A0A2G9GF54_9LAMI; Uncharacterized protein
STRINGMigut.N02416.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]