PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678460377
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bZIP
Protein Properties Length: 370aa    MW: 41728.4 Da    PI: 7.8912
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678460377genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.61.5e-0992129741
                HHCHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHH CS
     bZIP_1   7 errkqkNReAArrsRqRKkaeieeLe...ekvkeLeae 41 
                 rr ++NReAAr+sR+RKka++++Le   ++  +Le+e
  678460377  92 LRRQAQNREAARKSRLRKKAYVQQLEkckQRLIQLEQE 129
                69***********************9333345555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.6E-985135No hitNo description
SMARTSM003380.006989146IPR004827Basic-leucine zipper domain
PfamPF001701.6E-692118IPR004827Basic-leucine zipper domain
PROSITE patternPS00036093108IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.67E-793133No hitNo description
PfamPF141447.2E-26178252IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MNSGSTQFIP STRFCKQTHQ MATIWDDFKS SGYLDSPPPP PVIIEIDPIS ENQSEDTNSH  60
GKLGSCSKNH HDQQATKPEK VADNPLKFQS VLRRQAQNRE AARKSRLRKK AYVQQLEKCK  120
QRLIQLEQER DQTRTQGPYL DGSLDSIHPS ACPGGMNQGA AAFELEYGRW VEEQRKLMSE  180
LRSAMNSSMG EMELVGYVEK VLNHYYNLFS MKASAVKADA FYILSGLWKT PAERLFSWIG  240
GFRPSEILKV VSPHLGQLSE QQLLDISLLI RSCQQGEDAL TKGMERLHQI IAETIAGEGN  300
YPWQVSASME KLQDLVVFVS EADHLRRETL RQVSCLLSPS QAARGLLALG EYIQRLHALS  360
LAWTTTRHPT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678460377
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097615.11e-132TGACG-sequence-specific DNA-binding protein TGA-1A isoform X2
RefseqXP_011097616.11e-132TGACG-sequence-specific DNA-binding protein TGA-1A isoform X3
SwissprotP142321e-118TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBLA0A4D8ZE641e-134A0A4D8ZE64_SALSN; Transcription factor TGA
STRINGMigut.H02410.1.p1e-125(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7802497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-114bZIP family protein
Publications ? help Back to Top
  1. Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J
    A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems.
    Plant Mol. Biol., 2000. 42(5): p. 679-88
    [PMID:10809441]
  2. Johnson C,Boden E,Desai M,Pascuzzi P,Arias J
    In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor.
    Plant J., 2001. 28(2): p. 237-43
    [PMID:11722767]
  3. Katagiri F,Seipel K,Chua NH
    Identification of a novel dimer stabilization region in a plant bZIP transcription activator.
    Mol. Cell. Biol., 1992. 12(11): p. 4809-16
    [PMID:1406663]
  4. Miao ZH,Lam E
    Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants.
    Plant J., 1995. 7(6): p. 887-96
    [PMID:7599649]
  5. Pascuzzi P,Hamilton D,Bodily K,Arias J
    Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor.
    J. Biol. Chem., 1998. 273(41): p. 26631-7
    [PMID:9756903]