PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678457497
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family SBP
Protein Properties Length: 1066aa    MW: 117749 Da    PI: 6.7439
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678457497genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP71.51.5e-22151228177
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE.-TTTSSEEETTT--SS--S-STTTT-------S-- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrf.CqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                +Cqv+gC+++ls ak+yhrrhk          v ++ ++        s fh l+efD +krsCrrrLa+hn+rrrk +
  678457497 151 VCQVDGCKENLSAAKDYHRRHKAAISIFYDVLVKLKMQMSLLnLWLSSMFHLLREFDAGKRSCRRRLAGHNRRRRKIH 228
                6*********************987766666666555544441456899**************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.7E-13146214IPR004333Transcription factor, SBP-box
PROSITE profilePS5114118.572149227IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.45E-18150229IPR004333Transcription factor, SBP-box
PfamPF031104.2E-11152226IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.204.4E-4815960IPR020683Ankyrin repeat-containing domain
CDDcd002046.37E-5815957No hitNo description
PROSITE profilePS502978.587898968IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1066 aa     Download sequence    Send to blast
MEEAGGQVIT PIADYQNLVG RFCDSYPTSK KRGVSVHAPN AAYPDTSETW NANSWDWDPT  60
RFVAKPLQCD DVIVVGGQGI LRRNDDQSND SNPRMVHPTR EDQENIFLKL GGDSSAKSGT  120
SGETDSEELQ PSSKPVKRVR AGSPGGANYP VCQVDGCKEN LSAAKDYHRR HKAAISIFYD  180
VLVKLKMQMS LLNLWLSSMF HLLREFDAGK RSCRRRLAGH NRRRRKIHSE DSNTQLLAPQ  240
NRDKNISDVD LVNLLAMLSQ AQHNNRDTNR SFPNKDQLAQ IIGNMNSSLP ETLGPKLKGC  300
VPRHVNSVNQ NSTDKENTSL PSTRDLLAVL TATSPAPRTH DSQSDQTSAE GSESEKSKSS  360
CVNEVAHLNF HSGVTREFPF VGQSSRITSS PPLGDGELNV IETPPSLPLQ LFSSSHDDQH  420
LRKGQDCNVL SAQFKNPSRE AFQLSSKLVV HDFFAMHSSR ENPKDGNLPS GEVELPYLRG  480
NTSNFCSTSL QLYGGPSRLG ENVSFQESHN HMEQPSTSGS YYSTALKSDC QDQTGRIIFK  540
LFDKDPSHLP GSLRTQIYNW LSNSPSDMES YIRPGCILLS VYVAMSPIEW DKLEENLLNY  600
LKMLVDVIDS RFWGAGRFLV HTNRQMAISN GGRIRLCKSG RAGSVPQLIS VSPLAVVSTE  660
ETSILLKGTR LLASSTMIHC THAMGYCIEK HTSSSQNSMY DEILLVGFKV EGASTNRLGR  720
CFIEVENGSR AASFPIIIAD KAICQELKFL EPEIDCRLEI GDGIPTYVAE DEDRSDSREW  780
ALHFLNELGW LFQRKNNSSP SAFQDYSLTR LKFLLMFSVE HDFCAVVKTL LDILAEMNLC  840
QEGLVGDSLE MLSEIQLLTR AVRRRCQGMV NKLIHYSIID PVDNSKKYIF RSDVAGPGGI  900
TPLHLAASLP NAASIVDALT CDPLEVGLRS WGSVLDEQGL SPLEYASVSN NHSYNSLVAQ  960
KLADKSNDQA SISIDNAEQL SVEIDGHKNP SNLRPGTQPC SKCAVVAALG YSRKISGPPA  1020
LLHRSYIHSI LVVAAVCVCV CLLLRGRPFV GYSPPFAWET LDYGAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-15142226184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00664PBMTransfer from Potri.002G002400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678457497
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083361.10.0squamosa promoter-binding-like protein 14
TrEMBLA0A2G9GTF70.0A0A2G9GTF7_9LAMI; Uncharacterized protein
STRINGMigut.C00339.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128871219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76580.10.0SBP family protein