PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678447295
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family AP2
Protein Properties Length: 404aa    MW: 45137.5 Da    PI: 7.2983
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678447295genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91e-17120169155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a++k++g
  678447295 120 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAALKFRG 169
                78*******************......55************************998 PP

2AP242.41.8e-13212262155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  678447295 212 SKYRGVTLHK-CGRWEARMGQY--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 262
                89********.7******5552..1.25**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.2E-10120169IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-16120177IPR016177DNA-binding domain
CDDcd000182.24E-24120178No hitNo description
Gene3DG3DSA:3.30.730.103.9E-17121177IPR001471AP2/ERF domain
SMARTSM003808.1E-31121183IPR001471AP2/ERF domain
PROSITE profilePS5103218.097121177IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-17212271IPR016177DNA-binding domain
PfamPF008473.8E-9212262IPR001471AP2/ERF domain
CDDcd000182.83E-25212272No hitNo description
Gene3DG3DSA:3.30.730.106.9E-16213270IPR001471AP2/ERF domain
SMARTSM003802.0E-31213276IPR001471AP2/ERF domain
PROSITE profilePS5103215.527213270IPR001471AP2/ERF domain
PRINTSPR003673.8E-6214225IPR001471AP2/ERF domain
PRINTSPR003673.8E-6252272IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MAIFCLNLNI DLKSTVTDQS DAASKKTSLL NGDSIEHSGS SIASSDVIME SSSADNSEAS  60
CFVGFDVWKN NGECEKYSTS GYVMRQFFPV QKLEDQTLFQ GPERRKQVKK CRRGPRSRSS  120
QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHSAARAY DRAALKFRGL DADINFEVCD  180
YEEDLEMMRN LTKEEFVHIL RRQSTGFARG SSKYRGVTLH KCGRWEARMG QYLGKKYIYL  240
GLFDSEIEAA RAYDKAAIKC NGREAVTNFE PSMYDEELSS QHQTGILIAD EHQDLDLNLG  300
IAPPDAANSR NNRLIKKLGS SHLHSAPKDE LQAIGGTHPL YSHAAAGSCI SPLYKGIELK  360
GSTIADSCGY WPFVSNAASS GFAHTIELPD YLNNESKLTT QKQQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678447295
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077383.11e-127floral homeotic protein APETALA 2
SwissprotB8AMA91e-100AP22_ORYSI; APETALA2-like protein 2
SwissprotQ84TB51e-99AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A2G9GII31e-130A0A2G9GII3_9LAMI; Uncharacterized protein
STRINGGorai.009G104200.11e-114(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.29e-97AP2 family protein
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]