PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678446867
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family E2F/DP
Protein Properties Length: 361aa    MW: 39512 Da    PI: 6.1876
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678446867genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.78.5e-28107188271
    E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e               d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  678446867 107 SGRGLRQFSMK---VCEKVENkGRTTYNEVADELVAEfsypsnslapdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 188
                689********...******99******************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094048.1E-12411360IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.109.7E-46102193IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.4E-35106188IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.9E-25108188IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.26E-21109189IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.70E-41193296IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440747.06E-41194317No hitNo description
SMARTSM011389.8E-60195359IPR014889Transcription factor DP, C-terminal
PfamPF087817.1E-40196330IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MVNRSLNGKI NHEEGDKKTP SRNYRVDGNE NGASRSWAVT VSGQSMSTSG SVGSPSSRSE  60
AAAAAASDCT LNQLSNLDIH GDDAGSMGTT GSNRKKRGQR AAGGDKSGRG LRQFSMKVCE  120
KVENKGRTTY NEVADELVAE FSYPSNSLAP DQQQYDEKNI RRRVYDALNV LMAMDIISKD  180
KKEIQWKGLP CTSLNDVDEL RNESIALQNR IEKKAAYLEE LEQQYIGLQN LIARNKKLYG  240
SGNPPPGGVA LPFILVQTRP HATVEVEISE DMQLVHFDFN STPFELHDDN YVLKAMKFCE  300
APQTDEEKVQ AIPPVGDNSS IQPDQYHSQA SQSVKANASL GTLPGSSPLP GILKAHLKQE  360
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B5e-41100193193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678446867
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079068.11e-172LOW QUALITY PROTEIN: transcription factor-like protein DPB
SwissprotQ9FNY21e-152DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2G9FZK61e-180A0A2G9FZK6_9LAMI; E2F-like protein
STRINGMigut.K00137.1.p1e-171(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-140Transcription factor DP