PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678445352
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family G2-like
Protein Properties Length: 327aa    MW: 36067.7 Da    PI: 8.3149
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678445352genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1071.1e-334094155
    G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
               kprlrWt eLHerFveav+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  678445352 40 KPRLRWTVELHERFVEAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 94
               79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.6943797IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-323795IPR009057Homeodomain-like
SuperFamilySSF466899.14E-173995IPR009057Homeodomain-like
TIGRFAMsTIGR015577.6E-244095IPR006447Myb domain, plants
PfamPF002495.6E-84292IPR001005SANT/Myb domain
PfamPF143793.3E-25133179IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
AATEMFQGSQ KKPSASGVNS HDRAMCVQGD SGLVLTTDPK PRLRWTVELH ERFVEAVTQL  60
GGPDKATPKT IMRVMGVKGL TLYHLKSHLQ KFRLGKQPHK DFADHSMKDE LQRNNMASAG  120
MLGHGLNGGS NAHISDAIRM QMEVNRRLHE QLEVQRHLQL RIEAQGKYMQ TILEKACQTL  180
AGENVTAAPG GYNRAAIGRD VHGLKELDPG INYSTIQDLN IYLSSDQLDQ VPGHHHHLSN  240
VESFLGGHET LSRKKRSNPY SESHSGSVGK APFIWADDLR LQGLRTAPST SSMDEHPRTH  300
ISPITGDRSG GELDPVTDIF DSKPLMA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-194096157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-194096157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-194096157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-194096157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678445352
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095765.11e-143myb family transcription factor APL isoform X2
SwissprotQ9SAK57e-95APL_ARATH; Myb family transcription factor APL
TrEMBLA0A2G9G9Z51e-127A0A2G9G9Z5_9LAMI; Uncharacterized protein
STRINGEOY143101e-127(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79422231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.23e-97G2-like family protein
Publications ? help Back to Top
  1. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  4. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]