PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678443297
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Whirly
Protein Properties Length: 312aa    MW: 34407.4 Da    PI: 9.4104
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678443297genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly154.73e-4814427222138
     Whirly  22 dsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnls........... 110
                +sg++k++r+G++ll++a+ +++r+ydW++kq+f+ls+te++++++l++++s effhdp++++s+eG+vrk+lkvePlpd sG+f+nls           
  678443297 144 QSGAFKISREGFVLLQFAPGVGTRQYDWSRKQVFSLSVTEIGTIISLGARDSFEFFHDPFKGKSDEGRVRKVLKVEPLPDRSGHFFNLStplfllqilfs 243
                69*************************************************************************************9855555555555 PP

     Whirly 111 .vtnslvkgnesfsvPvskaefavlrsll 138
                 v+n+l++++es+++P++kae avl s +
  678443297 244 gVQNKLTNVDESIYIPITKAELAVLVSSF 272
                5799********************98866 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.6E-882115IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544474.55E-787118IPR009044ssDNA-binding transcriptional regulator
PfamPF085368.4E-45143269IPR013742Plant transcription factor
Gene3DG3DSA:2.30.31.105.4E-54143295IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544478.63E-53143312IPR009044ssDNA-binding transcriptional regulator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MLTPSLSANP TGRAWFLNSG LSSNIPAAPS VIFLPGRKGE ACAITPHGKR QFVVNAQCLT  60
PKEQNQHQQG FSNYESSLPA QPGQMPSRVY VGFSVYKGKA ALTVEPRPPE FSPLGVSYSM  120
LFFILSVCSA FLFRLNCFIT VPEQSGAFKI SREGFVLLQF APGVGTRQYD WSRKQVFSLS  180
VTEIGTIISL GARDSFEFFH DPFKGKSDEG RVRKVLKVEP LPDRSGHFFN LSTPLFLLQI  240
LFSGVQNKLT NVDESIYIPI TKAELAVLVS SFKFIVPHLL GWNTFANAVR PDESGHVGSA  300
NPTNAAELEW NR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A5e-918831137219p24: plant transcriptional regulator PBF-2
1l3a_B5e-918831137219p24: plant transcriptional regulator PBF-2
1l3a_C5e-918831137219p24: plant transcriptional regulator PBF-2
1l3a_D5e-918831137219p24: plant transcriptional regulator PBF-2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087065.11e-115PREDICTED: LOW QUALITY PROTEIN: single-stranded DNA-binding protein WHY1, chloroplastic, partial
SwissprotQ9LL853e-93WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA0A022QN471e-108A0A022QN47_ERYGU; Uncharacterized protein
STRINGGLYMA08G40850.11e-94(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77312430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.13e-93ssDNA-binding transcriptional regulator