PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678442531
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NAC
Protein Properties Length: 184aa    MW: 20893.6 Da    PI: 6.5059
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678442531genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.52.7e-3271201128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                lppGfrF Ptdeelvv++L ++++  +++  + i+++ +  ++PwdL+ k+  e ++wyf+s+r         ++r+t+sg W a g d++++s +g+++
  678442531   7 LPPGFRFYPTDEELVVHFLYRRAALLPCHP-DLIPDLALRPCDPWDLHGKAMREGDKWYFYSRRT--------QRRVTASGQWLADGADEAIHS-NGQKI 96 
                79*************************999.89**************9666677889*****985........479******************.999** PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                glkk L+fy      g+kt+W+mhe++l
  678442531  97 GLKKFLAFY----VGGVKTNWIMHEFAL 120
                *********....7899*********86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-454141IPR003441NAC domain
PROSITE profilePS5100538.6277143IPR003441NAC domain
PfamPF023652.0E-218120IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MGGHFNLPPG FRFYPTDEEL VVHFLYRRAA LLPCHPDLIP DLALRPCDPW DLHGKAMREG  60
DKWYFYSRRT QRRVTASGQW LADGADEAIH SNGQKIGLKK FLAFYVGGVK TNWIMHEFAL  120
LQPGSRNAKP DCSKWVICRV YEDGGGSDRD GGPELSCLDE VFLSIDDDDD LGEISSQAYK  180
RRTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-42414917174NAC domain-containing protein 19
3swm_B8e-42414917174NAC domain-containing protein 19
3swm_C8e-42414917174NAC domain-containing protein 19
3swm_D8e-42414917174NAC domain-containing protein 19
3swp_A8e-42414917174NAC domain-containing protein 19
3swp_B8e-42414917174NAC domain-containing protein 19
3swp_C8e-42414917174NAC domain-containing protein 19
3swp_D8e-42414917174NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092697.16e-72PREDICTED: NAC transcription factor 25-like
SwissprotQ8GWK61e-68NC104_ARATH; NAC domain-containing protein 104
TrEMBLM4ESY52e-69M4ESY5_BRARP; Uncharacterized protein
STRINGBra031915.1-P6e-69(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37662447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.17e-70xylem NAC domain 1