PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678441593
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 148aa    MW: 16387.5 Da    PI: 7.3572
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678441593genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-173787155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               s y+GVr++  +g+W+AeIrdp ++    r +lg+f+ + eAa+a+++a+k+++g
  678441593 37 SLYRGVRRRA-SGKWAAEIRDPEKG---GRLWLGTFDLEIEAAQAYDRAAKRIRG 87
               57*****888.8*********8543...8*********99*************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.98E-283795No hitNo description
SuperFamilySSF541716.54E-203796IPR016177DNA-binding domain
SMARTSM003804.3E-3038101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-283895IPR001471AP2/ERF domain
PROSITE profilePS5103221.7733895IPR001471AP2/ERF domain
PfamPF008476.2E-123887IPR001471AP2/ERF domain
PRINTSPR003673.5E-113950IPR001471AP2/ERF domain
PRINTSPR003673.5E-117797IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MCGDSADYGV PLTDSSTVFP EDFVAKGKKK TQRARHSLYR GVRRRASGKW AAEIRDPEKG  60
GRLWLGTFDL EIEAAQAYDR AAKRIRGQKA KLNFPGQVFQ PTSGGMAPAA EEAVEEESMK  120
ETLSQLEAFL ELSPSPDPAS VYPWSFFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1834951072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678441593
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269611.16e-29PREDICTED: ethylene-responsive transcription factor RAP2-3-like
RefseqXP_022972283.15e-29ethylene-responsive transcription factor RAP2-3-like
SwissprotO222594e-25ERF71_ARATH; Ethylene-responsive transcription factor ERF071
TrEMBLA0A1U8AT691e-27A0A1U8AT69_NELNU; ethylene-responsive transcription factor RAP2-3-like
TrEMBLS8DT322e-28S8DT32_9LAMI; Uncharacterized protein
STRINGXP_010269611.12e-28(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.13e-27ERF family protein
Publications ? help Back to Top
  1. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  2. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]
  3. Eysholdt-Derzsó E,Sauter M
    Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling.
    Plant Physiol., 2017. 175(1): p. 412-423
    [PMID:28698356]
  4. Eysholdt-Derzsó E,Sauter M
    Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis.
    Plant Biol (Stuttg), 2019. 21 Suppl 1: p. 103-108
    [PMID:29996004]