PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678428544
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family E2F/DP
Protein Properties Length: 356aa    MW: 38866.4 Da    PI: 7.6283
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678428544genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.91.5e-27105186271
    E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                ++++Lr++++k   +++k+e+ g++t+neva+eLv+e               d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  678428544 105 SGRGLRQFSMK---VCKKVESkGRTTYNEVADELVAEfadpsnslapdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 186
                689********...*****999******************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.2E-46100191IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.3E-35104186IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.4E-25106186IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.22E-21107187IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.01E-42191294IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440744.18E-41192303No hitNo description
SMARTSM011386.2E-62193354IPR014889Transcription factor DP, C-terminal
PfamPF087816.0E-40194303IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MVNRGLNGKV NHEEGDKKNP SRGSRVDANG AARSWGTTVS GQSMSTSGSV GSPSSRSEVA  60
TAAAASDSTL HQLSNFDIQG DDAGSQGTTG NRKKRGQRAT GGDKSGRGLR QFSMKVCKKV  120
ESKGRTTYNE VADELVAEFA DPSNSLAPDQ QQYDEKNIRR RVYDALNVLM AMDIISKDKK  180
EIQWKGLPCT SLNDIDELKN ETIALRNRIE KKAAYLEELE QQYIGLQNLI ARNEKLYGSG  240
NAPSGGVALP FILVQTRPHA TVEVEISEDM QLVHFDFNST PFELHDDNYV LKAMKFCETP  300
QTDAEKIPAN PAVGDKSTIR PDQHYPRSPQ PNASLGTIPG SSPLPGILKA HPKREL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B9e-4198191193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678428544
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079068.11e-180LOW QUALITY PROTEIN: transcription factor-like protein DPB
SwissprotQ9FNY21e-157DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2G9FZK60.0A0A2G9FZK6_9LAMI; E2F-like protein
STRINGXP_010241817.11e-177(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-143Transcription factor DP