PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678425870
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 316aa    MW: 35090.7 Da    PI: 9.7407
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678425870genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-30250307359
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++p+++++tYegeH h+
  678425870 250 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDEPSMLIVTYEGEHSHT 307
                9*************************988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.1E-16201246IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.0E-33236308IPR003657WRKY domain
PROSITE profilePS5081129.149243309IPR003657WRKY domain
SuperFamilySSF1182902.09E-26246307IPR003657WRKY domain
SMARTSM007749.5E-37248308IPR003657WRKY domain
PfamPF031061.6E-26250306IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEEVEMAAYA AVATCHRVIN VLSQHQDQSQ WESLADQTED AVQKFKKVVS LLGSGCGHAR  60
VRRGKRGPTH LPETIFLESP VAGADEPPPK ALQLLQINPP LQLGSHPQIA HLPPQTPLQN  120
YHYLQQQRLQ LQQQQQLKQH NAEGMYERSI SGVSLNFDSS SCTRSFISSL SVDASVPNLD  180
GRNFRLIGAS KSADQSSDHH KRKCSARGDD GRVKCGGSGK CHCSKKRKHR IKRSIKVPAI  240
SNKLADIPPD EYSWRKYGQK PIKGSPHPRG YYKCSSVRGC PARKHVERCV DEPSMLIVTY  300
EGEHSHTKLA AHSSNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-20241306771WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080000.11e-150PREDICTED: probable WRKY transcription factor 21 isoform X1
RefseqXP_011080001.11e-150PREDICTED: probable WRKY transcription factor 21 isoform X1
RefseqXP_011080002.11e-150PREDICTED: probable WRKY transcription factor 21 isoform X1
SwissprotQ9SR071e-99WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLA0A0D5YA321e-141A0A0D5YA32_SALMI; WRKY protein
STRINGPGSC0003DMT4000389861e-133(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.13e-71WRKY DNA-binding protein 39