PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678425666
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NAC
Protein Properties Length: 320aa    MW: 37254.6 Da    PI: 7.1397
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678425666genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.72.3e-53271531128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                lppGfrFhPtdeelv++yL+ kv + + +    ++e+d++++ePw+Lp ++k +e+ewyfFs rd+ky+tg r+nrat++gyWkatgkd+ev+s +g++v
  678425666  27 LPPGFRFHPTDEELVTFYLASKVFSPRDHGLIDFAEIDLNRCEPWELPDAAKMGEREWYFFSFRDRKYPTGLRTNRATEAGYWKATGKDREVFS-GGSVV 125
                79***********************99888788***************8888999***************************************.99*** PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                g+kktLvfy+grap+gekt+Wvmheyrl
  678425666 126 GIKKTLVFYRGRAPRGEKTKWVMHEYRL 153
                **************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-5920163IPR003441NAC domain
PROSITE profilePS5100556.21827207IPR003441NAC domain
PfamPF023651.1E-2728153IPR003441NAC domain
SuperFamilySSF1019416.15E-59195206IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MLPVEDILCE LKTEDDEDAV QRWGLHLPPG FRFHPTDEEL VTFYLASKVF SPRDHGLIDF  60
AEIDLNRCEP WELPDAAKMG EREWYFFSFR DRKYPTGLRT NRATEAGYWK ATGKDREVFS  120
GGSVVGIKKT LVFYRGRAPR GEKTKWVMHE YRLDGDLSCR HIAKVRAHTL ITLNLLKLIQ  180
KETSKLSFVL FCLVWQEEWV ICRVFNRSCN KRRSYLQGET QQEQRYPQSF QTLNPFLMQQ  240
AQYSDMKTLM PPSTVLSAPF GDKWCKKEAD FEPRLKLLPQ GFIGLEWEEQ FIIPNPNPFG  300
LGGDDNSHRV VAVEKEAMTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swp_D1e-472515318145NAC domain-containing protein 19
3swp_C1e-472515318145NAC domain-containing protein 19
3swp_B1e-472515318145NAC domain-containing protein 19
3swp_A1e-472515318145NAC domain-containing protein 19
3swm_D1e-472515318145NAC domain-containing protein 19
3swm_C1e-472515318145NAC domain-containing protein 19
3swm_B1e-472515318145NAC domain-containing protein 19
3swm_A1e-472515318145NAC domain-containing protein 19
4dul_B1e-472515315142NAC domain-containing protein 19
4dul_A1e-472515315142NAC domain-containing protein 19
1ut7_B1e-472515315142NO APICAL MERISTEM PROTEIN
1ut7_A1e-472515315142NO APICAL MERISTEM PROTEIN
1ut4_B1e-472515315142NO APICAL MERISTEM PROTEIN
1ut4_A1e-472515315142NO APICAL MERISTEM PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074066.13e-88PREDICTED: protein CUP-SHAPED COTYLEDON 3
SwissprotQ9S8517e-81NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLR4N7J55e-87R4N7J5_JATCU; NAC transcription factor 007
TrEMBLS8CHB68e-88S8CHB6_9LAMI; Uncharacterized protein (Fragment)
STRINGPOPTR_0002s00730.11e-85(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.14e-82NAC family protein