PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678424831
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family CPP
Protein Properties Length: 500aa    MW: 55617.6 Da    PI: 7.9944
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678424831genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR39.51.1e-12126163240
        TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                +kk+C+Ck+s+C+k+YCeCfa+g +C+e C+C +C+Nk 
  678424831 126 KKKKCSCKNSRCVKLYCECFASGIYCDE-CNCINCCNKI 163
                79*************************9.********96 PP

2TCR49.21e-15198236240
        TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                +++gCnCkk++ClkkYCeC++a++ Cse+CkC +CkN e
  678424831 198 HNRGCNCKKTSCLKKYCECYQANTLCSEKCKCVGCKNYE 236
                899**********************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011149.5E-13125165IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.28126237IPR005172CRC domain
PfamPF036381.4E-9127162IPR005172CRC domain
SMARTSM011143.8E-16197238IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.6E-11200235IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MQQSESPAAA STVVRQLDFA TNLNPMILPG HPQAQLELKL RVLAQSPPRM AAMPHWETVM  60
RPKSPKKEMI LVTKPLESAA AVAELSLPVE PGFLHYSALQ RPLVSKKTTE IHQRSNPEHA  120
YVTPNKKKKC SCKNSRCVKL YCECFASGIY CDECNCINCC NKIEFDECRR DAIRTTLERK  180
PDAFKSKMAS SPDHAVEHNR GCNCKKTSCL KKYCECYQAN TLCSEKCKCV GCKNYEGSEE  240
NILHQAYSIA FQQPRTVAFN DAFGSPHKKI NTLEFGFSDS IHRQGSIHLP HLDQNATFSM  300
SDISYAPVSK RICKPAAQHP KHSYRSMLSG ILQEEHIQNL CTTMINATAQ PPKCLSDKKN  360
GVDPGVVEVT ACSSREDKED ENKNSIAISS NQSDPPVVPD RMPLSPETQA LICDEQARTF  420
MRLEAPSTTQ ESAKSATEIQ PSESAYIEQE RLVLTHFCNF LNTIITRGSI RGDQSILPPH  480
VTSQASILLP LYLLTGGRIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-2312724611134Protein lin-54 homolog
5fd3_B3e-2312724611134Protein lin-54 homolog
Cis-element ? help Back to Top
SourceLink
PlantRegMap678424831
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.16e-62Tesmin/TSO1-like CXC domain-containing protein