PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678422365
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family SBP
Protein Properties Length: 217aa    MW: 24208.7 Da    PI: 9.4257
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678422365genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP94.21.3e-2986155177
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                +CqvegC++dl++ak+yhrrhk+Ce+hsk+p v+v+g+e+r       fh+lsefD++krsCr+rL++hn+rrr+ q
  678422365  86 CCQVEGCRVDLKTAKDYHRRHKICEKHSKSPRVIVAGMERR-------FHDLSEFDDKKRSCRKRLNDHNARRRRVQ 155
                6**************************************96.......7*************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.1E-2480141IPR004333Transcription factor, SBP-box
PROSITE profilePS5114124.56484154IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.43E-2985159IPR004333Transcription factor, SBP-box
PfamPF031106.7E-2287153IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MESNSLSSSQ LEWRDLVLYS GTQKLMSLES NGLGTSSSSN CLLSADQLGC LSSSYKKQHV  60
IASSLTVSAS PMKRARVSGA HARNPCCQVE GCRVDLKTAK DYHRRHKICE KHSKSPRVIV  120
AGMERRFHDL SEFDDKKRSC RKRLNDHNAR RRRVQLETIQ LHPLRPSSSF YGSFEISCFQ  180
LIIIASSVDF LLCMGRCHEN AAAWVVEPGP ILAAPTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-20871531184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135152KKRSCRKRLNDHNARRRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678422365
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022888133.17e-44squamosa promoter-binding-like protein 12 isoform X1
SwissprotA2YGR52e-33SPL12_ORYSI; Squamosa promoter-binding-like protein 12
SwissprotQ5Z8182e-33SPL12_ORYSJ; Squamosa promoter-binding-like protein 12
STRINGXP_010252163.11e-39(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA136441216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.44e-31squamosa promoter binding protein-like 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Liu Q, et al.
    The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f.
    J Integr Plant Biol, 2015. 57(10): p. 819-29
    [PMID:25677853]