PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678414827
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family FAR1
Protein Properties Length: 779aa    MW: 89089.3 Da    PI: 7.078
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678414827genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1100.12.3e-3173163290
       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+  +++ +r+r++tr+gCka+l vk +++gkw v+++++eHnHel+
  678414827  73 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTVTRVGCKASLSVKIQDSGKWIVSSFSKEHNHELV 163
                9***************************************998888545677889**********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-2973163IPR004330FAR1 DNA binding domain
PfamPF105517.7E-31285377IPR018289MULE transposase domain
PfamPF044344.1E-10561599IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.09565601IPR007527Zinc finger, SWIM-type
SMARTSM005756.4E-8576603IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MENGVIEFDI GLGGGDESID IETSTEHGEV PDDTNSRGSG SAGNTSTYVP VGDIDLEPYE  60
GMEFESEEAA KAFYNSYARR VGFSTRVSSS RRSRKDGAII QRSFVCAKEG FRNLNEKRTK  120
DREIKRPRTV TRVGCKASLS VKIQDSGKWI VSSFSKEHNH ELVRPDEVHR LRSHRQISGP  180
AKTLIDTLQA AGMGPRRIMS VLVKEYGGIS KVGFTEVDCR NYMRNSKKRS MEGDIQLLLD  240
YLKQKHAENP SFLYSVQLDE EQCTGNVFWA DLRARADYNH FGDTVTFDTT YRSNRYRLPF  300
APFTGLNHHG HPVLFGCAFL INESEASFVW LFRTWLAAMS GRAPMSITTE HDAVIRSAVT  360
QVFPTARHRF CKWHIYKQCQ EKLSQVMLKH TQFEAAFHKC VNLSETTEEF ESCWYSLVDK  420
YDLRDHKWFQ AIFDDRRQWV PAYLRDNFFA EMSITQRSDS MNSYFDGYVN ASTSLSQFFR  480
LYEKALESRH EKEVKADFDT MNTPPVLRTP SPMEKQASEF YTRRIFTRFQ EELISTLTYV  540
ASKTEDDGEV TTYQVEKFGE NHKAYHVRFN VLEMKVACSC QMFEFSGLLC RHILAVFRVT  600
NVLTLPSHYI LKRWTRNAKS SVVLEEHVSG FNSYLESHMV RYNTLRHEAF KIADEGAESV  660
ESYTVAMAAF ADASRKVALA TMTEGKVPMA NGSSFSHDSA MDAIHSVHCH KGQGSSAGQL  720
SEANMDEKIT ELSKDLEHAN HKCEVYRMNL LSLLRDIEDH KQRLSVEVQN IKLSLRDGL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678414827
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552571.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_020552572.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_020552573.10.0protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2G9G6P20.0A0A2G9G6P2_9LAMI; Uncharacterized protein
STRINGEOX989490.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]