PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678413400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 319aa    MW: 34453 Da    PI: 10.2724
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678413400genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.31e-30237294359
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+++d +++++tYegeH+h+
  678413400 237 DEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERATDDRNMLIVTYEGEHHHS 294
                9************************9888****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.4E-14187233IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.1E-32223296IPR003657WRKY domain
PROSITE profilePS5081131.548230296IPR003657WRKY domain
SuperFamilySSF1182901.31E-26233296IPR003657WRKY domain
SMARTSM007742.4E-34235295IPR003657WRKY domain
PfamPF031063.0E-26237293IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAVEMMGYSD RSEEMAIQEA AAAGLKSMEH LIRTVSQQNQ QADCREIADF TVSRFKKVIS  60
ILDRAGHARF RRGPVQPRLS VPPVVVHNPA PQPFHPPKTG VFSLSTAQPL TLDFTKPVAG  120
ALFRKNGGAG NEVFTLSTAV STSGNSSSTF VSSITGEGSV SNGKVGAFST PIGKSPLSGN  180
GNASGSKRCR EHELSDNISG GKNSNSSRCN CKKRKSRVKR SIKVPAISSK IADIPPDEYS  240
WRKYGQKPIK GSPYPRGYYK CSTVRGCPAR KHVERATDDR NMLIVTYEGE HHHSHPAIQE  300
IPDGAIAAVP PHLVVFESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-222312961074WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082056.11e-137PREDICTED: probable WRKY transcription factor 17
SwissprotQ9SV154e-99WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLA0A022Q3561e-132A0A022Q356_ERYGU; Uncharacterized protein
STRINGVIT_04s0069g00920.t011e-111(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31452250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.23e-82WRKY DNA-binding protein 11