PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678411738
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ZF-HD
Protein Properties Length: 316aa    MW: 33731.7 Da    PI: 8.3085
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678411738genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer111.54.4e-3555111358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                   v+Y+eClkNhAas+GghavDGCgEfmps++++ +++++lkCaACgCHRnFHRre++
    678411738  55 VVNYRECLKNHAASIGGHAVDGCGEFMPSPNSNpAEPTSLKCAACGCHRNFHRREPD 111
                  589*****************************99********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-2356112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.6E-2956110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015669.5E-3157109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.57658109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.13E-14196262IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-26197262IPR009057Homeodomain-like
TIGRFAMsTIGR015652.7E-23201258IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDLGGNSTVK TPEAETATPT GMLPAKPSPF TNGVLKRHQQ PAPVNQDNHS HQPVVVNYRE  60
CLKNHAASIG GHAVDGCGEF MPSPNSNPAE PTSLKCAACG CHRNFHRREP DDPRPNDVPA  120
LEYHPLHRHH PPPPQIQGGN SSGSPVNSPS PPPISSSYYP SATHTLLALS HGLSGAPPGN  180
SSLASAPCNP AAVAIFSSGS RKRFRTKFTQ YQKEKMLELA EKVGWKMQKK DEDVINESCS  240
GMGVDKGVFK VWMHNNKNAL GRKDSLHPPP ETTPLLPQPP PPPLPSSTAA AYTQDDIQLN  300
SYHSAPGTTN GSPSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-192002591675ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678411738
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085755.11e-101zinc-finger homeodomain protein 9
TrEMBLA0A2G9HG831e-104A0A2G9HG83_9LAMI; Uncharacterized protein
STRINGXP_009620291.15e-86(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.16e-64homeobox protein 34