PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678408709
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 375aa    MW: 41688 Da    PI: 4.597
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678408709genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-19117166255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAaka+++ +++++g
  678408709 117 QYRGIRQRP-WGKWAAEIRDPKK---GVRVWLGTFNTAEEAAKAYDEEARRIRG 166
                69*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.28E-32117176No hitNo description
Gene3DG3DSA:3.30.730.103.4E-32117175IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-21117175IPR016177DNA-binding domain
PROSITE profilePS5103223.604117174IPR001471AP2/ERF domain
SMARTSM003803.7E-38117180IPR001471AP2/ERF domain
PfamPF008479.6E-12118166IPR001471AP2/ERF domain
PRINTSPR003671.9E-11118129IPR001471AP2/ERF domain
PRINTSPR003671.9E-11140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MCGGAIISDV LPPLSRTSRR LTAALLWGSD SGELAGKGNR GGYHSKPLRS PPLVSLDDDF  60
EADFQDFKDH SDVDDEFDAK GSFEFAASAF KGGLRSLDSC ESDEECEKPS KRKRKNQYRG  120
IRQRPWGKWA AEIRDPKKGV RVWLGTFNTA EEAAKAYDEE ARRIRGKKAK VNFPQDAPHT  180
GARRDLKSNS QKAISQENRD FDHPPANEME YMKMLNNGYY DSLTFFDEKP EIKPKCLNGV  240
YAPTTNVEPI AHTLSDDYFS PDQGSNSFYC SDLGWSETEI CATVPEISAV NSADIEVGQA  300
QFLSNGSPQN SLPRIESSDA TAFDSQMKMY QVSYLDNNWV STIDALLDGD ATQNTGHSMD  360
LWSFDDVLDI AGCAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-22117174260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678408709
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072679.11e-145ethylene-responsive transcription factor RAP2-12-like isoform X1
TrEMBLA0A2G9GX081e-144A0A2G9GX08_9LAMI; Uncharacterized protein
STRINGMigut.I01124.1.p1e-134(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.28e-52related to AP2 12