PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678402943
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ZF-HD
Protein Properties Length: 286aa    MW: 31534.5 Da    PI: 7.5774
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678402943genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.11.8e-323895460
  ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreveee 60
                 ++Y eClkNhAaslGgha+DGCgEf+ps++++ +++++lkCa CgCHRnFHRr++e++
    678402943 38 ITYGECLKNHAASLGGHALDGCGEFLPSPEANpSDPTSLKCAVCGCHRNFHRRDPEQH 95
                 79******************************9********************99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-213895IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.5E-273892IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.9E-283991IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.8384091IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.53E-17158231IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-28165231IPR009057Homeodomain-like
TIGRFAMsTIGR015653.7E-25170226IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
METTDSTVKS PGVEPQGFTN GLLKLHGQLG LHHHPVVITY GECLKNHAAS LGGHALDGCG  60
EFLPSPEANP SDPTSLKCAV CGCHRNFHRR DPEQHHHLPP PGAVLALEYR PHHRHLPPTP  120
ETMAGSPNDS PSPPPISSSY YPPLTALSHP ISDPTGTNSV SAALLPSSSR KRFRTKFTQD  180
QKKKMLELAE KLEWKMQKRD EEVINNFCHE IGVDRTVFKV WMHNNKHIYS KRDHFSSTPT  240
PPPAVADTGI IDSCLPSPAG GSYIHQAHIA EHKENITNHH PEISRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A5e-211702271774ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169183RKRFRTKFTQDQKKK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678402943
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085755.12e-78zinc-finger homeodomain protein 9
SwissprotQ9LXG05e-59ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A2G9HG837e-84A0A2G9HG83_9LAMI; Uncharacterized protein
STRINGSolyc02g067320.1.14e-72(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.15e-49homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]