PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678399425
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 190aa    MW: 21059.1 Da    PI: 10.0081
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678399425genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-182069255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
               +++GVr++ ++g+Wv+eIr+p        +r++lg+f+tae+Aa+a+++a+  ++g
  678399425 20 KFRGVRQR-YWGSWVSEIRHP-----LlkRRVWLGTFDTAEKAARAYDEAAVIMRG 69
               89****77.5**********8.....334**********************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.2E-321977IPR001471AP2/ERF domain
PfamPF008479.9E-112068IPR001471AP2/ERF domain
CDDcd000187.48E-312078No hitNo description
SuperFamilySSF541712.16E-202078IPR016177DNA-binding domain
SMARTSM003803.9E-362083IPR001471AP2/ERF domain
PROSITE profilePS5103221.9972077IPR001471AP2/ERF domain
PRINTSPR003673.4E-102132IPR001471AP2/ERF domain
PRINTSPR003673.4E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MLPVRSGQLA TSYMVPQRRK FRGVRQRYWG SWVSEIRHPL LKRRVWLGTF DTAEKAARAY  60
DEAAVIMRGR NAKTNFPIPA EVFPSSAYTS LAAILNAKLQ KCGKSPPSPS LTCLRLDTEN  120
SHIGVWQKRA GPRSGSRWVM TVELGNKGRI AAEAELPAAE VEGEAAHVAG DVASDEEERI  180
ALQMIEELLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1620771472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678399425
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021666622.14e-76ethylene-responsive transcription factor WIN1-like
SwissprotQ9XI335e-64WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A2I4H6I98e-73A0A2I4H6I9_JUGRE; ethylene-responsive transcription factor WIN1-like
TrEMBLS8CLD51e-72S8CLD5_9LAMI; Uncharacterized protein
STRINGcassava4.1_016167m5e-73(Manihot esculenta)
STRINGXP_010254403.13e-73(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13522476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.14e-54ERF family protein
Publications ? help Back to Top
  1. Taketa S, et al.
    Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(10): p. 4062-7
    [PMID:18316719]
  2. Al-Abdallat AM,Al-Debei HS,Ayad JY,Hasan S
    Over-expression of SlSHN1 gene improves drought tolerance by increasing cuticular wax accumulation in tomato.
    Int J Mol Sci, 2014. 15(11): p. 19499-515
    [PMID:25350113]
  3. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  4. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]
  5. Sajeevan RS, et al.
    Expression of Arabidopsis SHN1 in Indian Mulberry (Morus indica L.) Increases Leaf Surface Wax Content and Reduces Post-harvest Water Loss.
    Front Plant Sci, 2017. 8: p. 418
    [PMID:28421085]