PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678397481
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 408aa    MW: 45071.6 Da    PI: 4.5388
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678397481genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.6e-19160209255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ +++++g
  678397481 160 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDEEARRIRG 209
                69*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.854160217IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-32160218IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-21160217IPR016177DNA-binding domain
SMARTSM003803.0E-38160223IPR001471AP2/ERF domain
CDDcd000181.61E-33160218No hitNo description
PRINTSPR003671.3E-11161172IPR001471AP2/ERF domain
PfamPF008476.3E-12161209IPR001471AP2/ERF domain
PRINTSPR003671.3E-11183199IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MCGGAIISDL GLPAQRSLRR LTADLLWGTD LENLDAAKNI GKRSKPVVEV DDDFEADFLG  60
FKDDSEAPFA SKNLTSKGGY SYVFFFLLSG SVFGNLVYHE CLVLSACFVG LCVGGIIPCS  120
KAYSCVLSDL ICFIPGVSGS VGCDSDEDCE KTLKRKRKNQ YRGIRQRPWG KWAAEIRDPR  180
KGVRVWLGTF NTAEEAARAY DEEARRIRGK KAKVNFPEGA VPPTSKRTAK QKVSPKESRN  240
FIQPLENETM DFMKMINNEY YEPLMFLEEK KPPNPVPPLD AAHAYFSSDQ GSNSFDCSDF  300
GWGEHCANTP EISSEICPVI EGEPTPFELD VSQAKKGKMI PRVSVTRNDN SANNISDDLA  360
AFTPQAPFLD SNWDGSIDSF LDEDTTQDGD SVDLWSFDDL LDAAGCAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22160217260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678397481
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072679.11e-123ethylene-responsive transcription factor RAP2-12-like isoform X1
SwissprotQ6K7E68e-55ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A022Q4401e-110A0A022Q440_ERYGU; Uncharacterized protein
TrEMBLA0A2G9GX081e-110A0A2G9GX08_9LAMI; Uncharacterized protein
STRINGMigut.I01124.1.p1e-111(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.12e-50related to AP2 2
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]