PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678394935
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family G2-like
Protein Properties Length: 299aa    MW: 32634.7 Da    PI: 7.1944
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678394935genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.71.7e-3095148155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  678394935  95 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 148
                59*******************.********************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.55E-2092152IPR009057Homeodomain-like
PROSITE profilePS5129411.05992151IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-3094153IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-2496148IPR006447Myb domain, plants
PfamPF002491.1E-798147IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MKEEDSISDW LSKWEDELPS PEDLIPISQS LITPDLALAF NIPSPHKTQT PPRPPLVSPS  60
QHNSSAEFDS PEVSAVAPGP SGGSGSDELA RTLKRPRLVW TPQLHKRFVD AVAHLGIKNA  120
VPKTIMQLMS VDGLTRENVA SHLQKYRLYL KRMQGISSSG GAPATGMDPA TDHLFASSPV  180
PPHFLHPNGG NSDHFMPFVP VATPHHLHHQ MRVVPPSPNQ FRPFGNGSPP NGQFEHPFLR  240
HSQSPAHVPR ISSTGTTALV QQHHGNGNGP ARPPPYIEDL EPTNRRKVLT LFPTGDDDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-2094153463ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070088.11e-116PREDICTED: transcription factor PCL1-like
SwissprotQ9SNB43e-52PCL1_ARATH; Transcription factor LUX
TrEMBLM1CPV31e-103M1CPV3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000722131e-102(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24322354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.18e-74G2-like family protein