PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678393057
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 93aa    MW: 10859.2 Da    PI: 9.488
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678393057genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.11.1e-09652347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +WT+   + + da + +  +   +W   ar +g g++ +++k+++qk+
        678393057  6 SWTAKQNKAFEDALATYDRDtpdRWQNLARAVG-GKSVEEVKLHYQKL 52
                     7*****************99*************.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.132257IPR017884SANT domain
SMARTSM007171.3E-7355IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-4557IPR009057Homeodomain-like
SuperFamilySSF466898.58E-12560IPR009057Homeodomain-like
CDDcd001671.63E-6653No hitNo description
PfamPF002491.8E-6652IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSGNSSWTAK QNKAFEDALA TYDRDTPDRW QNLARAVGGK SVEEVKLHYQ KLVHDIDHIE  60
SGRVPVPNYR DINSRHSRMA ELQDQRMKYM KLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-297701174RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678393057
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083676.13e-41protein RADIALIS-like 4
SwissprotF4JVB81e-33RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLS8D6U55e-51S8D6U5_9LAMI; Uncharacterized protein
STRINGXP_009760253.12e-35(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.14e-36RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]