PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678384052
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family AP2
Protein Properties Length: 408aa    MW: 44103.8 Da    PI: 8.059
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678384052genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.8e-17140189155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  678384052 140 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 189
                78*******************......55************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.4E-9140189IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-16140198IPR016177DNA-binding domain
CDDcd000182.38E-11141199No hitNo description
Gene3DG3DSA:3.30.730.103.5E-17141197IPR001471AP2/ERF domain
SMARTSM003801.3E-32141203IPR001471AP2/ERF domain
PROSITE profilePS5103217.899141197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MLDLNIGAYE VDFASGDDDQ ENGNHRTADS VASTTTSNNA AKDEANCSSS SSLYTLNFSS  60
ILGKNGAIHI DDDAGDSVNE LQLFPTSPST AAPDRANYWL NLSSSEGAGS AQLGIYKTQL  120
PISNPAQPKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY  180
DRAAIKFRGV DADINFSISD YEEDMKQMMN FTKEEFVHIL RRQSTGFSRG SSKYGGVPLQ  240
KPDRWEVSNG QAMANKGYDK AAIQCNAREA VTGFEASKQM REMNFAWRDG GSGSSVDLNL  300
GISLSPNAAA RSLRFPLTTR EMVDGPSLKG ESTPASSREV QAPLKYPPPW AGIHPGFSPN  360
TKDRSAASAS FEGGFPKWPP MQILVPAASS GFSLAAPTAA SPSAFPKF
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678384052
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011102158.11e-106ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ9SK035e-79RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A2G9HWF31e-110A0A2G9HWF3_9LAMI; Uncharacterized protein
STRINGMigut.F02018.1.p7e-99(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.22e-73related to AP2.7