PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678378075
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ZF-HD
Protein Properties Length: 294aa    MW: 32268 Da    PI: 8.5069
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678378075genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer109.32.1e-3464119458
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                  +rY+eClkNhAa+lGghavDGCgEfmps+  + +++++lkCaACgCHRnFHRre++
    678378075  64 IRYRECLKNHAAALGGHAVDGCGEFMPSPAVNpSDPTSLKCAACGCHRNFHRREND 119
                  79*****************************99********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-2364126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047707.7E-2964118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.2E-3165117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.1966117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.31E-16176246IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-28180246IPR009057Homeodomain-like
TIGRFAMsTIGR015659.9E-25185241IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MARDFGASVK SFNFVNEIES SSTVQATVAE VETPTAGIQS PCRNGGMRIQ APAYHNLSHH  60
PVVIRYRECL KNHAAALGGH AVDGCGEFMP SPAVNPSDPT SLKCAACGCH RNFHRRENDD  120
PHAPPAAMLA LEYRPNHRHH PPPPPPQMVS SPNNSPSPPP ISSTYFPSAP HMPLLPGGSD  180
GSLSRKRFRT KFTQNQKEKM LELADKIEWK MQKSEADTIN EFCREIGVDK SVFKVWMHNN  240
KHAFAKRDQN LLLNSSSATT TPLSSATRGD SNDNAQNHVD TNTSRSQTNG SSPW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-181852431775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678378075
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022864994.12e-74zinc-finger homeodomain protein 9-like
SwissprotQ9LXG03e-64ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLS8EFN45e-82S8EFN4_9LAMI; Uncharacterized protein
STRINGXP_010257380.13e-67(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.11e-60homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]