PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678378020
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 285aa    MW: 31511 Da    PI: 5.1471
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678378020genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-19137186255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa a++  +++++g
  678378020 137 KYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFDTAEAAAMAYDMEALRFRG 186
                8********.**********64....55************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.0E-32136195IPR001471AP2/ERF domain
CDDcd000181.53E-32137196No hitNo description
SMARTSM003804.9E-36137200IPR001471AP2/ERF domain
PROSITE profilePS5103224.816137194IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-22137195IPR016177DNA-binding domain
PfamPF008474.2E-12137186IPR001471AP2/ERF domain
PRINTSPR003671.2E-11138149IPR001471AP2/ERF domain
PRINTSPR003671.2E-11160176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
LAGFNDHSSP LCFDSPEESR FSGVSPLDSM TLHMRDFKVE NSSPEAFQFH SWGGGIEIET  60
THRQFFHSEN GNYSMLPGYS REMGVSTMMS TLTNAGEVGG GGGVCSQSGS IVTIVKGPAV  120
YAYSTVVTLN RDSSPRKYRG VRQRPWGKWA AEIRDPVKAA RVWLGTFDTA EAAAMAYDME  180
ALRFRGNKAK LNFPENVKLA NREPSNPPPD QHRSSNPPPP TVDTHPQVQG CYSEYDNQYN  240
AWSTLDETMM FYPSVTDYTA SSPLPAELWP EMSEFAAIHW PGDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-23136197163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00289DAPTransfer from AT2G33710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678378020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159794.11e-36hypothetical protein PHAVU_002G267800g
TrEMBLV7CR133e-35V7CR13_PHAVU; Uncharacterized protein
STRINGXP_007159794.16e-36(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-27ethylene response factor 110