PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678373485
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family SBP
Protein Properties Length: 618aa    MW: 69348 Da    PI: 8.6483
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678373485genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP39.12e-1211404877
               SEEETTT--SS--S-STTTT-------S-- CS
        SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkq 77
               rfh l +fDe+krsCrr+L++hn+rrr+k+
  678373485 11 RFHPLPDFDEGKRSCRRKLERHNNRRRRKS 40
               9**************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114113.255139IPR004333Transcription factor, SBP-box
PfamPF031103.8E-71139IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-91142IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MKVLEKKRSI RFHPLPDFDE GKRSCRRKLE RHNNRRRRKS DDSKQSLGKE AQQINLEDHV  60
SGDGDSGKDG VGVSSRMEEG GPSLESEGHE TCPSLGLQRQ QSDEINADVQ KQDSIQRSSP  120
SSGENKNAFS SACPTARISF KLYDWNPAEF PRRLRLQIFE WLKSMPVELE GYIRPGCTIL  180
TAFVAIPRPI WRKVLDDPIL NIRILLSSPS NELYQRGSML IYMNDTAFRV TKDRKALVKV  240
KVKDCCPRLH YVHPTCFVAG RPIEFVACGS NLLQSNLRFL ISFSGRYLAY NISVPSRCCM  300
EIFTPSFDHQ LVKIVAPLTD ENLVGPAFVE VSWPGYLISY DINPEGEEPK TIKLAPTFPL  360
QVENQLGLSN FVPILVADRQ TSAEMQLLIQ DLDISPFAGK KKPCLSCNIM TSRQARISEL  420
LLDVAWLVKP ERDKPLTASD VPRFNSLLKF LIEKESSAVL ERVLGSLSSA LSKYSGNGVS  480
LTDMSALHKN IRHAERMLLL SKGKFYFPCS QMPDQLLAPA TNTETVKDMN MAREISESQD  540
SCSSVPLLAA DVEMKVNHDN SRTWRHLRLA LTPSLLTARS LTAMTALFLC VGACMLIFHP  600
HSVSLIAVTI RRCMFGIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12537RRKLERHNNRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap678373485
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071504.10.0squamosa promoter-binding-like protein 7
TrEMBLA0A2G9GY100.0A0A2G9GY10_9LAMI; Uncharacterized protein
STRINGMigut.N00133.1.p1e-177(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54072433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.21e-104squamosa promoter binding protein-like 7