PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678371898
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 130aa    MW: 14944.9 Da    PI: 8.8205
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678371898genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.7e-094389347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      WT+   + + da + +  +   +W   ar +g g++ +++k+++q +
        678371898 43 TWTAKQNKAFEDALATYDRDtpdRWQNMARAVG-GKSVEEVKLHYQRL 89
                     7*****************99*************.************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.8023994IPR017884SANT domain
SMARTSM007171.8E-74092IPR001005SANT/Myb domain
SuperFamilySSF466891.71E-114298IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-44396IPR009057Homeodomain-like
PfamPF002491.0E-54389IPR001005SANT/Myb domain
CDDcd001671.12E-64390No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MSPSDFLPDP PPHQHYIRAG LQCENSILQA SCLQGCKMSS NSTWTAKQNK AFEDALATYD  60
RDTPDRWQNM ARAVGGKSVE EVKLHYQRLV HDINRIESGK VPVPNYKDFS SKNNKIAEMQ  120
EQRMKYMKLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-2839130693RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678371898
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083676.16e-42protein RADIALIS-like 4
SwissprotF4JVB82e-34RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLS8D6U52e-48S8D6U5_9LAMI; Uncharacterized protein
STRINGXP_009365559.16e-37(Pyrus x bretschneideri)
STRINGXP_008364991.16e-37(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.17e-37RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]