PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678368991
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 23524.1 Da    PI: 9.8723
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678368991genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.71.7e-29959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krien + rqvtfskRr+g+lKKA+ELSvLCdaeva+i+fss+g+l e+ss
  678368991  9 KRIENATSRQVTFSKRRAGLLKKAHELSVLCDAEVALIVFSSKGRLCEFSS 59
               79***********************************************96 PP

2K-box61.82.6e-2181172898
      K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                s ++e+k++ ++ +   L+++i  L  ++R+l+Ge+Les+s++eL+ Le qLe+sl+k + +K  l +e+ie+l++kek+l++en++L+k++
  678368991  81 SiVDESKMQGSDGNPVDLNNRIAFLDDSKRKLMGENLESCSVEELEALELQLEQSLSKFKCRKGVLRKEEIERLKEKEKNLSKENTELKKRY 172
                24788899999999999***********************************************************************9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.104161IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-31384IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-29323IPR002100Transcription factor, MADS-box
CDDcd002656.99E-38375No hitNo description
PfamPF003191.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.61288178IPR002487Transcription factor, K-box
PfamPF014869.5E-2097171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVRGKTQIKR IENATSRQVT FSKRRAGLLK KAHELSVLCD AEVALIVFSS KGRLCEFSSS  60
SVIDSTIERY LKAKNPEVSK SIVDESKMQG SDGNPVDLNN RIAFLDDSKR KLMGENLESC  120
SVEELEALEL QLEQSLSKFK CRKGVLRKEE IERLKEKEKN LSKENTELKK RYSMLPSPSP  180
IKRPSAAIRD VDVETALVIG LPDSRIGRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-19184183Myocyte-specific enhancer factor 2B
1tqe_Q3e-19184183Myocyte-specific enhancer factor 2B
1tqe_R3e-19184183Myocyte-specific enhancer factor 2B
1tqe_S3e-19184183Myocyte-specific enhancer factor 2B
6c9l_A3e-19184183Myocyte-specific enhancer factor 2B
6c9l_B3e-19184183Myocyte-specific enhancer factor 2B
6c9l_C3e-19184183Myocyte-specific enhancer factor 2B
6c9l_D3e-19184183Myocyte-specific enhancer factor 2B
6c9l_E3e-19184183Myocyte-specific enhancer factor 2B
6c9l_F3e-19184183Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678368991
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071972.17e-71agamous-like MADS-box protein AGL19
SwissprotA2Z9Q71e-57MAD56_ORYSI; MADS-box transcription factor 56
TrEMBLA9YTS51e-64A9YTS5_9LAMI; SOC1-like protein 2
STRINGSolyc08g080100.2.13e-62(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.15e-43AGAMOUS-like 20