PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678364458
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 26535.3 Da    PI: 9.881
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678364458genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.16.5e-30959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krien++nrqvt+skRrng++KKA+EL vLCda+v++i++sst+kl+ey+s
  678364458  9 KRIENQTNRQVTYSKRRNGLFKKAHELTVLCDAKVSIIMISSTQKLHEYIS 59
               79***********************************************86 PP

2K-box87.13.4e-2971166196
      K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                yqk+ g++l+++++e++q++l+kLk+ ++nL+re+R+++Ge+L++L ++++  L ++++ksl+ iR++K++++ +qie+++kk ++++e +++   
  678364458  71 YQKAVGVDLWSTHYEQMQEHLKKLKEVNRNLRREIRQRMGESLNELGYEQMVDLIENMDKSLSLIRERKYKVIGNQIETSKKKVRNADEVHRKYLL 166
                799999***********************************************************************************9987655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.5E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.244161IPR002100Transcription factor, MADS-box
CDDcd002651.46E-38280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-36396IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-28323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.0E-1682162IPR002487Transcription factor, K-box
PROSITE profilePS5129714.59784174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD AKVSIIMISS TQKLHEYISP  60
ATTTKQVFDQ YQKAVGVDLW STHYEQMQEH LKKLKEVNRN LRREIRQRMG ESLNELGYEQ  120
MVDLIENMDK SLSLIRERKY KVIGNQIETS KKKVRNADEV HRKYLLQFDA ARQEDPHYGL  180
VENEADFNSV LGFSGGGPRI ITLHLPPSHP HHGIHTGSGA SDLTTFPLLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-16159159MEF2C
5f28_B2e-16159159MEF2C
5f28_C2e-16159159MEF2C
5f28_D2e-16159159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678364458
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001297059.11e-133uncharacterized protein LOC105963010
SwissprotP237061e-137DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBLQ2WBM81e-134Q2WBM8_9LAMI; Deficiens protein
STRINGXP_009794650.11e-124(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23142451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-94MIKC_MADS family protein
Publications ? help Back to Top
  1. Schwarz-Sommer Z, et al.
    Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development.
    EMBO J., 1992. 11(1): p. 251-63
    [PMID:1346760]
  2. Sommer H, et al.
    Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors.
    EMBO J., 1990. 9(3): p. 605-13
    [PMID:1968830]
  3. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  4. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]