PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678355817
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NAC
Protein Properties Length: 238aa    MW: 26697.4 Da    PI: 7.5683
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678355817genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.94.1e-49101381129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrF+P+d+elv++yL kk+++++l++  ++ e+d++++ePw Lp  +k +++ewyfFs rd+ky tg r+nrat++gyWkatgkd++v+++ ++ +
  678355817  10 LPPGFRFSPSDQELVCHYLYKKIANQHLPT-GTLVEIDLHTCEPWMLPDVAKLNSEEWYFFSFRDRKYVTGFRANRATARGYWKATGKDRPVVDAaTRGV 108
                79***************************9.88***************87778899*************************************9877788 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129
                vg++ktLvfy+ rap+g+kt W++he+rle
  678355817 109 VGMRKTLVFYNHRAPNGVKTGWILHEFRLE 138
                ***************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-599156IPR003441NAC domain
PROSITE profilePS5100555.60610156IPR003441NAC domain
PfamPF023651.6E-2611137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGLKDIGETL PPGFRFSPSD QELVCHYLYK KIANQHLPTG TLVEIDLHTC EPWMLPDVAK  60
LNSEEWYFFS FRDRKYVTGF RANRATARGY WKATGKDRPV VDAATRGVVG MRKTLVFYNH  120
RAPNGVKTGW ILHEFRLENP GLPPKEDWVL CRVFKKSRSP PWEGPTGRLI APRDDSGEAT  180
SSDAPLIKPG IGHPAHLTAA PSGPKCEEDY GFLLDLCDPN EIGFRHPTIG DDSSSVFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-47915916168NO APICAL MERISTEM PROTEIN
1ut4_B1e-47915916168NO APICAL MERISTEM PROTEIN
1ut7_A1e-47915916168NO APICAL MERISTEM PROTEIN
1ut7_B1e-47915916168NO APICAL MERISTEM PROTEIN
4dul_A1e-47915916168NAC domain-containing protein 19
4dul_B1e-47915916168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678355817
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012837084.14e-96PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ84TE63e-57NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A2Z7BHR25e-96A0A2Z7BHR2_9LAMI; NAC domain-containing protein 21/22-like
STRINGMigut.D00437.1.p1e-95(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18822466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.14e-83NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]