PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678354320
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family SBP
Protein Properties Length: 609aa    MW: 66388.7 Da    PI: 8.2561
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678354320genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP125.13e-39302379178
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                +C vegC+ dls+akeyhr+hkvC+ hsk+++v+v g+e+rfCqqCsrfh+lsefD++krsCrrrL +hn+rrrk+q+
  678354320 302 RCIVEGCALDLSTAKEYHRKHKVCDNHSKSSKVIVGGVERRFCQQCSRFHNLSEFDDKKRSCRRRLFDHNARRRKPQQ 379
                6**************************************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.9E-32297364IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.393300377IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.05E-37301382IPR004333Transcription factor, SBP-box
PfamPF031101.6E-29303376IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MTTRSDATRS RLSASPNRGR WFSGSSVDSA APYSDLESPL KLNAGPYPAC SAASSLHLFS  60
CPVIGTPTPI PIPSSPFLDI IFNSQLPVSL SLFIFRFFPS LLSKLVSCSY LLYSPRVMLL  120
RDGVVERLQI GNIGCSFIAF AFGRDTEALR SRGGATRVVM DWNGKWDWDN LVSFGSKATY  180
GPRKLGLGDV FLMDGEIDTT SPFNLSSVSD GHHASAESST RDETRNPTFK LMISKDSARH  240
SMKEAEVCGL GEVEPLIGLK LGKRTYFENA GPVGNDKASS SSGKLSTSNR SKSAYRSSPI  300
PRCIVEGCAL DLSTAKEYHR KHKVCDNHSK SSKVIVGGVE RRFCQQCSRF HNLSEFDDKK  360
RSCRRRLFDH NARRRKPQQE SMLFSSAAPS SPFYGGREQL GFFLTNGSHI STRHCSTTKF  420
TLSGDHSIRC EGDEGITDPM HAPVIELSNN HAMHIPTSAG LFSSKISTPG FLDSGCKESF  480
IASPPPPHME AATEYGRALS LLSTNNSSNS WGSCGLPAPV HCQGIMLPPA AEPRVPAMYG  540
LGLGLAEEAL PDFLLSGHHH SSAHSTQEAQ DQESSSQVLR ATHKPEQPGF YQNGPEMTDK  600
TSSQFGFFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-26297376584squamosa promoter binding protein-like 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358375KKRSCRRRLFDHNARRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap678354320
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G9H1C01e-106A0A2G9H1C0_9LAMI; Uncharacterized protein
STRINGMigut.K00951.1.p6e-96(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41292444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-45squamosa promoter binding protein-like 2