PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678347340
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NF-YC
Protein Properties Length: 215aa    MW: 23874.9 Da    PI: 4.5457
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678347340genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC171.96.9e-54301331101
      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                ql++fw++q   iek++dfknh+lPlarikki+kadedv+misaeaP+l+ kacelfilelt+rswlhaee+krrtl+ksdi aa+trtdifdflvd vp
  678347340  30 QLQVFWAYQrqeIEKVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFEKACELFILELTIRSWLHAEEKKRRTLQKSDIVAAITRTDIFDFLVDLVP 129
                89****9998899*************************************************************************************** PP

      NF-YC  98 rdel 101
                rde+
  678347340 130 RDEI 133
                *986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.86E-3227124IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.0E-3444116IPR009072Histone-fold
PfamPF008081.5E-1952115IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MENNPQPQSA AAAAYPPPYQ HLLQQQQQQQ LQVFWAYQRQ EIEKVNDFKN HQLPLARIKK  60
IMKADEDVRM ISAEAPILFE KACELFILEL TIRSWLHAEE KKRRTLQKSD IVAAITRTDI  120
FDFLVDLVPR DEINDDVGGI LSPQGDSAGV TGIPYYYPPM GQPAMGQPAF DPTVYAQAGA  180
PVPPQPWQTV WQTAPADDSY AGGGDPASTG GKLEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-5138130395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102108RRTLQKS
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678347340
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022852290.12e-92nuclear transcription factor Y subunit C-1-like isoform X1
RefseqXP_022852291.12e-92nuclear transcription factor Y subunit C-1-like isoform X2
SwissprotQ9FMV55e-81NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLS8CYK12e-91S8CYK1_9LAMI; Uncharacterized protein
STRINGMigut.D01269.1.p1e-89(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40872143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.27e-78nuclear factor Y, subunit C4
Publications ? help Back to Top
  1. Hwang YH, et al.
    Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
    Plant Cell Rep., 2016. 35(4): p. 857-65
    [PMID:26754793]
  2. Liu X, et al.
    The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12768
    [PMID:27624486]
  3. Myers ZA, et al.
    NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(9): p. e1006333
    [PMID:27685091]
  4. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  6. Qi M, et al.
    QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests.
    Plant Biotechnol. J., 2019. 17(1): p. 252-263
    [PMID:29878511]