PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678337050
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 262aa    MW: 28473.8 Da    PI: 9.5815
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678337050genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.8e-1992141255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+W+AeIrdp++    +r++lg+f +ae Aa a+++a+++++g
  678337050  92 HYRGVRQRP-WGKWAAEIRDPKK---GARVWLGTFESAEAAAVAYDQAALRFKG 141
                7********.**********954...4************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.7E-3291150IPR001471AP2/ERF domain
SMARTSM003801.8E-3892155IPR001471AP2/ERF domain
PfamPF008472.7E-1292141IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2292150IPR016177DNA-binding domain
CDDcd000187.77E-2392150No hitNo description
PROSITE profilePS5103224.59292149IPR001471AP2/ERF domain
PRINTSPR003679.1E-1193104IPR001471AP2/ERF domain
PRINTSPR003679.1E-11115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDGKRTLSSD GGSETKPDGI VNPFVVCSDP SNRDMSTMVA ALSHVLGCQN LPQQPLPDSM  60
HGPPFSSWLP LVYAPLLQAQ EQGAPTNARR RHYRGVRQRP WGKWAAEIRD PKKGARVWLG  120
TFESAEAAAV AYDQAALRFK GNKAKVNFPE RVQEKPEMGY LTTTRHDPSA ADQRTSNHSI  180
ASASSQVPVY THSRHPNVHH FKELYGDNGN GFTSGRFSSG GPIAAPLYLQ QAQTLENFQP  240
CQGASSVSGS FQGLGGFEGK KP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2688153167ATERF1
3gcc_A4e-2688153167ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678337050
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028091882.11e-47ethylene-responsive transcription factor ERF113-like
SwissprotQ9FH544e-42EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A438EZ171e-46A0A438EZ17_VITVI; Ethylene-responsive transcription factor ERF114
STRINGXP_008356833.12e-47(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.13e-36ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]