PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678336424
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NAC
Protein Properties Length: 247aa    MW: 28307.8 Da    PI: 4.7222
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678336424genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.46.9e-5461411128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..........kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                lppGfrFhPtdeelv++yLk+k++g ++el ++i+evd+yk+ePw+L             + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd+
  678336424   6 LPPGFRFHPTDEELVNYYLKRKIHGLEIEL-DIIPEVDLYKCEPWELVGdpkclvveksFLPSKDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDR 104
                79****************************.99**************6345677665543344778********************************** PP

        NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                +v+s +++++g+kktLv+y+grap+g +tdWvmheyrl
  678336424 105 KVTS-QRRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRL 141
                ****.8999***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-614164IPR003441NAC domain
PROSITE profilePS51005586164IPR003441NAC domain
PfamPF023652.9E-307141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSPVGLPPGF RFHPTDEELV NYYLKRKIHG LEIELDIIPE VDLYKCEPWE LVGDPKCLVV  60
EKSFLPSKDP EWYFFGPRDR KYPNGFRTNR ATRAGYWKST GKDRKVTSQR RAIGMKKTLV  120
YYRGRAPQGI RTDWVMHEYR LDDKGSDEAS GIQESYALCR VLKKNWLSTE VEGQGQSSNL  180
LLLDLTPTES ETLSPELPMA SSSSNIGNME EEDGNGKEDD EDESWMQFIR DGVCCGDELS  240
QMVFTNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-51116512166NO APICAL MERISTEM PROTEIN
1ut4_B2e-51116512166NO APICAL MERISTEM PROTEIN
1ut7_A2e-51116512166NO APICAL MERISTEM PROTEIN
1ut7_B2e-51116512166NO APICAL MERISTEM PROTEIN
3swm_A2e-51116515169NAC domain-containing protein 19
3swm_B2e-51116515169NAC domain-containing protein 19
3swm_C2e-51116515169NAC domain-containing protein 19
3swm_D2e-51116515169NAC domain-containing protein 19
3swp_A2e-51116515169NAC domain-containing protein 19
3swp_B2e-51116515169NAC domain-containing protein 19
3swp_C2e-51116515169NAC domain-containing protein 19
3swp_D2e-51116515169NAC domain-containing protein 19
4dul_A2e-51116512166NAC domain-containing protein 19
4dul_B2e-51116512166NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072043.11e-127PREDICTED: NAC domain-containing protein 86
SwissprotA4VCM07e-84NAC45_ARATH; NAC domain-containing protein 45
TrEMBLA0A068TRH51e-123A0A068TRH5_COFCA; Uncharacterized protein
STRINGPOPTR_0015s05450.11e-118(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46212442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-106NAC domain containing protein 57