PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678336243
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 203aa    MW: 23659.2 Da    PI: 7.8467
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678336243genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.61.1e-32129187159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+Hnh+
  678336243 129 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHS 187
                59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-34114187IPR003657WRKY domain
SuperFamilySSF1182901.05E-28121187IPR003657WRKY domain
PROSITE profilePS5081129.585124186IPR003657WRKY domain
SMARTSM007746.3E-38129188IPR003657WRKY domain
PfamPF031062.5E-25130186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MEQQQGSDHS LPTLYSYHNP QIAFPLHHQQ MRFPHFEDQN HLFSFLGPQP LDTGSSSAKN  60
ADEAGLGFGG KPSWSHEPLD PKDMNDEQCN GNTTENGNCW WKEKSKVKMR RKLREPRFCF  120
QTRSDVDVLD DGYKWRKYGQ KVVKNSLHPR SYYRCTHNNC RVKKRVERLS EDCRMVITTY  180
EGRHNHSPCD ESNSSELDGF SSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-26120186874Probable WRKY transcription factor 4
2lex_A3e-26120186874Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00618PBMTransfer from AT2G44745Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007052352.11e-82WRKY family transcription factor
SwissprotQ93WY44e-65WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBLA0A061DUM51e-82A0A061DUM5_THECC; WRKY family transcription factor
STRINGGLYMA07G13611.12e-75(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73362029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.12e-66WRKY family protein