PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678325198
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 274aa    MW: 30369.6 Da    PI: 6.3649
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678325198genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.3e-30128186259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +D ++WrKYGqK++kgs+fprsYYrC+s+  C+++k+ver++++p+++ +tY+ eHnh+
  678325198 128 SDVWCWRKYGQKPIKGSPFPRSYYRCSSSkLCTARKQVERDKSNPEIFLVTYTAEHNHP 186
                69*************************9979***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-28120188IPR003657WRKY domain
PROSITE profilePS5081131.674122188IPR003657WRKY domain
SuperFamilySSF1182901.06E-24123188IPR003657WRKY domain
SMARTSM007747.6E-35127187IPR003657WRKY domain
PfamPF031061.3E-24129186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MDGTDDWDLH AVVRSCSTSS TTTTDGGALP STSAGAVAFS ELRFQNPTDE RRSDELRDFG  60
VSNWGDLPRI LLPFSQHNML ISHEMDKQSS PQQNPAAPSR SEEVKRYKKR KSVTTKQICR  120
VDAKNLPSDV WCWRKYGQKP IKGSPFPRSY YRCSSSKLCT ARKQVERDKS NPEIFLVTYT  180
AEHNHPAPSN RSLPSGATRQ KPTEEVEKTE VKEKLLVDGD TNNGDFSFSN MAMDDFFVGM  240
GGLVPGEDEG CSWDSEPTYP VNSSAGGATN SGRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-161251891578Probable WRKY transcription factor 4
2lex_A9e-161251891578Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLS8CMY13e-57S8CMY1_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25912457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.17e-50WRKY family protein