PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678313238
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ZF-HD
Protein Properties Length: 252aa    MW: 27482.4 Da    PI: 8.6938
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678313238genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer93.91.4e-293699358
  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCg.......Efmpsegee.gtaaalkCaACgCHRnFHRreve 58
                  v YkeClkNhAa+lGghavDGCg        fmps++++ +++++lkCaACgCHRnFHRr+++
    678313238 36 VVSYKECLKNHAAALGGHAVDGCGxxxxxxxKFMPSPNSNpSEPTSLKCAACGCHRNFHRRDPD 99
                 589********************955555556********9********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-163497IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.4E-243798IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.6E-253997IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.4643997IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.0E-15159229IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-26163229IPR009057Homeodomain-like
TIGRFAMsTIGR015658.4E-23168225IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDLGSDSALK VSEQDPEAQA GGVVSKSMSL SRHPVVVSYK ECLKNHAAAL GGHAVDGCGX  60
XXXXXXKFMP SPNSNPSEPT SLKCAACGCH RNFHRRDPDT PPPIETPVLE YHPVNRHRAP  120
PPQSPTNSPS PPPISSAYAP HMLLALSHGL CSGATPPERG NLGNGGTRKR FRTKFTPSQK  180
EKMLQLAEKV DWKMQKKDED WINESCTEMG VDKGVFRVWM HNNKNTLGKN DHHAPINSPG  240
NLPLVTKPAS FE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-191672261675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
UniProtTranscription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678313238
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085755.12e-74zinc-finger homeodomain protein 9
SwissprotQ9LXG04e-53ZHD8_ARATH; Zinc-finger homeodomain protein 8
SwissprotQ9SEZ12e-53ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLS8D0153e-78S8D015_9LAMI; Uncharacterized protein (Fragment)
STRINGAES774111e-68(Medicago truncatula)
STRINGPGSC0003DMT4000343682e-68(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.11e-49homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]