PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678292223
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 88aa    MW: 10214.3 Da    PI: 9.5779
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678292223genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.67.9e-10652347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +WT+   + + da + +  +   +W+  ar +g g+t  ++k ++qk+
        678292223  6 SWTPTQNKAFEDALATYDRDtpdRWHNLARAVG-GKTVDEVKRHYQKL 52
                     7*****************99*************.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.295153IPR017877Myb-like domain
SMARTSM007172.3E-7355IPR001005SANT/Myb domain
CDDcd001671.69E-6653No hitNo description
PfamPF002491.6E-6652IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-5658IPR009057Homeodomain-like
SuperFamilySSF466891.79E-12660IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MSSNSSWTPT QNKAFEDALA TYDRDTPDRW HNLARAVGGK TVDEVKRHYQ KLVRDINHIE  60
SGKVPLPNYT DFARVQEQRF ASEAKFFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-28280687RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678292223
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027089785.13e-38protein RADIALIS-like 3
RefseqXP_027092702.13e-38protein RADIALIS-like 3
RefseqXP_027149598.13e-38protein RADIALIS-like 3
SwissprotQ1A1734e-32RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLS8D6U57e-40S8D6U5_9LAMI; Uncharacterized protein
STRINGcassava4.1_028103m4e-35(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.12e-34RAD-like 6