PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678290680
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MIKC_MADS
Protein Properties Length: 251aa    MW: 29234.7 Da    PI: 9.2238
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678290680genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.51.1e-30958150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krien++nrqvtf+kRrng+lKKA+ELSvLCdaevavi+fs++g+ly ++
  678290680  9 KRIENNTNRQVTFCKRRNGLLKKAYELSVLCDAEVAVIVFSNRGRLYQFP 58
               79**********************************************97 PP

2K-box86.45.6e-29851769100
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 +e  ae++qqe +kL+++i++Lq  +RhllGe+L+sL++ke++qLe++Le++++kiR++K+e++l++++ l k+   l++en ++r+k++e
  678290680  85 PHEIRAEQYQQECKKLRQQIQMLQDANRHLLGEGLGSLNVKEMKQLESRLERGISKIRNRKHEMILAETDGLEKRGVLLEQENAYMRAKIQE 176
                6778899**********************************************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.786161IPR002100Transcription factor, MADS-box
CDDcd002657.04E-41272No hitNo description
SuperFamilySSF554553.53E-31279IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-31323IPR002100Transcription factor, MADS-box
PfamPF003194.8E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-313859IPR002100Transcription factor, MADS-box
PfamPF014864.6E-2389174IPR002487Transcription factor, K-box
PROSITE profilePS5129714.90290180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGRGKIEIKR IENNTNRQVT FCKRRNGLLK KAYELSVLCD AEVAVIVFSN RGRLYQFPLD  60
SRSVKETIER YKIKKREDQE TPNVPHEIRA EQYQQECKKL RQQIQMLQDA NRHLLGEGLG  120
SLNVKEMKQL ESRLERGISK IRNRKHEMIL AETDGLEKRG VLLEQENAYM RAKIQENERL  180
QELSMMPPGA ELSMMPGAGP ELNMMMPNGQ ELALQAYYTR HLLQFNVMEG VSSEADYIVQ  240
NKKDLRLGYD Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-19190180Myocyte-specific enhancer factor 2B
1tqe_Q5e-19190180Myocyte-specific enhancer factor 2B
1tqe_R5e-19190180Myocyte-specific enhancer factor 2B
1tqe_S5e-19190180Myocyte-specific enhancer factor 2B
6c9l_A5e-19190180Myocyte-specific enhancer factor 2B
6c9l_B5e-19190180Myocyte-specific enhancer factor 2B
6c9l_C5e-19190180Myocyte-specific enhancer factor 2B
6c9l_D5e-19190180Myocyte-specific enhancer factor 2B
6c9l_E5e-19190180Myocyte-specific enhancer factor 2B
6c9l_F5e-19190180Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678290680
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012855039.11e-101PREDICTED: agamous-like MADS-box protein AGL11 isoform X2
SwissprotF6I4571e-82AG11C_VITVI; Agamous-like MADS-box protein AGL11
TrEMBLA0A2G9H1Q51e-100A0A2G9H1Q5_9LAMI; MADS box transcription factor
STRINGMigut.C01334.1.p4e-97(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-76MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Mejía N, et al.
    Molecular, genetic and transcriptional evidence for a role of VvAGL11 in stenospermocarpic seedlessness in grapevine.
    BMC Plant Biol., 2011. 11: p. 57
    [PMID:21447172]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  5. Malabarba J, et al.
    The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
    J. Exp. Bot., 2017. 68(7): p. 1493-1506
    [PMID:28369525]
  6. Royo C, et al.
    The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
    Plant Physiol., 2018. 177(3): p. 1234-1253
    [PMID:29853599]