PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_27018-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 126aa    MW: 14674 Da    PI: 9.9213
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_27018-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.6e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+  +k +G g+W++ ++     R++k+c++rw +yl
  TRIUR3_27018-P1 14 KGAWTKEEDQRLIAHIKDHGEGCWRSLPKAAXXXRCGKSCRLRWINYL 61
                     79******************************99************97 PP

2Myb_DNA-binding58.51.5e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ eEdel++++++ lG++ W++Ia +++ gRt++++k++w+++
  TRIUR3_27018-P1  67 RGNFSDEEDELIIKLHEFLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.182961IPR017930Myb domain
SMARTSM007174.9E-131363IPR001005SANT/Myb domain
SuperFamilySSF466891.19E-2913108IPR009057Homeodomain-like
PfamPF002493.8E-141461IPR001005SANT/Myb domain
CDDcd001671.62E-91661No hitNo description
PROSITE profilePS5129427.08662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2865116IPR009057Homeodomain-like
SMARTSM007173.2E-1766114IPR001005SANT/Myb domain
PfamPF002491.5E-1667111IPR001005SANT/Myb domain
CDDcd001672.14E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLIAHIK DHGEGCWRSL PKAAXXXRCG KSCRLRWINY  60
LRPDLKRGNF SDEEDELIIK LHEFLGNKWS LIAGRLPGRT DNEIKNYWNT HVKRKLLARG  120
VDPQTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-311311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2261400.0KF226140.1 Triticum aestivum cultivar RNIL_Sumai3 R2R3-Myb transcription factor (MybFhb5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977234.12e-83PREDICTED: myb-related protein Zm38-like
RefseqXP_015697509.13e-82PREDICTED: myb-related protein 308
SwissprotP813931e-81MYB08_ANTMA; Myb-related protein 308
SwissprotQ388511e-81MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A126CZG42e-87A0A126CZG4_WHEAT; R2R3-Myb transcription factor
TrEMBLW5F4T39e-88W5F4T3_WHEAT; Uncharacterized protein
STRINGMLOC_63914.12e-85(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.17e-83myb domain protein 6